Results 41 - 60 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6731 | 3' | -52.6 | NC_001875.2 | + | 128878 | 0.76 | 0.574316 |
Target: 5'- cGCgGCGcAGACCUGGGCGgcGAagcCCGCUg -3' miRNA: 3'- -CG-CGCaUUUGGACCUGCaaCU---GGCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 6676 | 0.67 | 0.95701 |
Target: 5'- aGCGaCGaGGACCggUGGACGgcGGCCaGCg -3' miRNA: 3'- -CGC-GCaUUUGG--ACCUGCaaCUGG-CGg -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 79782 | 0.66 | 0.980705 |
Target: 5'- cGCGcCGUGcaaaCUGGACGcgcGACUGCg -3' miRNA: 3'- -CGC-GCAUuug-GACCUGCaa-CUGGCGg -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 94787 | 0.74 | 0.678257 |
Target: 5'- uGCGCGUAAugUaucACGUUGuGCCGCCg -3' miRNA: 3'- -CGCGCAUUugGaccUGCAAC-UGGCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 41028 | 0.73 | 0.739272 |
Target: 5'- cGCGCGUGcACCaGGAUGgcGcCCGCg -3' miRNA: 3'- -CGCGCAUuUGGaCCUGCaaCuGGCGg -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 125333 | 0.66 | 0.978454 |
Target: 5'- cGCGC---AAUCUGGGCaacGGCCGCUu -3' miRNA: 3'- -CGCGcauUUGGACCUGcaaCUGGCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 29990 | 0.66 | 0.973378 |
Target: 5'- uGCGCGgcGGCggUGGAcugcagcgugcCGUUGACCcaugcGCCg -3' miRNA: 3'- -CGCGCauUUGg-ACCU-----------GCAACUGG-----CGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 102520 | 0.66 | 0.970538 |
Target: 5'- uGCGCGccAugCUGGACGa--ACUGCa -3' miRNA: 3'- -CGCGCauUugGACCUGCaacUGGCGg -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 49830 | 0.67 | 0.963881 |
Target: 5'- aGCGCGUuucgugcAACCaggucgugcucgaUGGGCGccGGCgGCCg -3' miRNA: 3'- -CGCGCAu------UUGG-------------ACCUGCaaCUGgCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 36850 | 0.67 | 0.960004 |
Target: 5'- gGC-CGgcGAUCUGGACGauuacguggaggUGACgCGCCc -3' miRNA: 3'- -CGcGCauUUGGACCUGCa-----------ACUG-GCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 117091 | 0.68 | 0.948867 |
Target: 5'- cGCGCGUgugGAugCUcuACGUcauUGugCGCCa -3' miRNA: 3'- -CGCGCA---UUugGAccUGCA---ACugGCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 59044 | 0.68 | 0.929669 |
Target: 5'- cGCGCGUucgcGGCCUGcaaACGcUGcuCCGCCg -3' miRNA: 3'- -CGCGCAu---UUGGACc--UGCaACu-GGCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 9418 | 0.7 | 0.886587 |
Target: 5'- cGCGCGaGGACCUGGuauuGCGUU-ACUgGCCc -3' miRNA: 3'- -CGCGCaUUUGGACC----UGCAAcUGG-CGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 59563 | 0.7 | 0.877293 |
Target: 5'- gGCGC----GCCUGGcuucguucaauugcAUGUUGACCGCg -3' miRNA: 3'- -CGCGcauuUGGACC--------------UGCAACUGGCGg -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 38109 | 0.71 | 0.840583 |
Target: 5'- cCGCGUGAACacccguCUGGugGUUuuuaauaacGugCGCCu -3' miRNA: 3'- cGCGCAUUUG------GACCugCAA---------CugGCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 27261 | 0.72 | 0.768602 |
Target: 5'- uGUGCGUGAACg-GGACGggcgUGGgCGUCg -3' miRNA: 3'- -CGCGCAUUUGgaCCUGCa---ACUgGCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 66010 | 0.77 | 0.500623 |
Target: 5'- uUGCGaUGAACCUGGACGUgcccuauuaucgguUGGgCGCCc -3' miRNA: 3'- cGCGC-AUUUGGACCUGCA--------------ACUgGCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 128962 | 0.66 | 0.976014 |
Target: 5'- -gGCGUGAG-CUGGGCGagcggaUGACgCGCUc -3' miRNA: 3'- cgCGCAUUUgGACCUGCa-----ACUG-GCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 96817 | 0.69 | 0.924253 |
Target: 5'- aGCGcCGUcAAgCUGGACGUUauGCgCGCCu -3' miRNA: 3'- -CGC-GCAuUUgGACCUGCAAc-UG-GCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 19346 | 0.69 | 0.924253 |
Target: 5'- uGgGCGUGGugCgcGGAgCGUUGGCCGaCg -3' miRNA: 3'- -CgCGCAUUugGa-CCU-GCAACUGGCgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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