Results 81 - 100 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6731 | 3' | -52.6 | NC_001875.2 | + | 66305 | 0.68 | 0.944889 |
Target: 5'- uGCGCGgccggcgaguugauGGCgUGGGCG---GCCGCCg -3' miRNA: 3'- -CGCGCau------------UUGgACCUGCaacUGGCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 33456 | 0.68 | 0.948867 |
Target: 5'- aGCGCGgccGGCCagUGGuCGaaagUGGCgCGCCg -3' miRNA: 3'- -CGCGCau-UUGG--ACCuGCa---ACUG-GCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 127238 | 0.67 | 0.967488 |
Target: 5'- --aCGacAGCCUGGAUaaGUUGACCGUg -3' miRNA: 3'- cgcGCauUUGGACCUG--CAACUGGCGg -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 77502 | 0.67 | 0.967488 |
Target: 5'- gGCGCGU---CCaacGACG-UGACCGUCa -3' miRNA: 3'- -CGCGCAuuuGGac-CUGCaACUGGCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 107771 | 0.66 | 0.969645 |
Target: 5'- uGCGCcauucaagAAGCCUGaacgaggcaauaguGACGUUgaacagccacgcGACCGCCg -3' miRNA: 3'- -CGCGca------UUUGGAC--------------CUGCAA------------CUGGCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 119069 | 0.66 | 0.970538 |
Target: 5'- uGCGCGgcGccccGgCUGGACaacaACCGCCa -3' miRNA: 3'- -CGCGCauU----UgGACCUGcaacUGGCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 7715 | 0.66 | 0.973378 |
Target: 5'- uGCuGCGUGAACgCgucGGACaUUGAC-GCCg -3' miRNA: 3'- -CG-CGCAUUUG-Ga--CCUGcAACUGgCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 44890 | 0.66 | 0.973378 |
Target: 5'- uGCGCc---GCUUGGACGcUGGCgcuCGCCc -3' miRNA: 3'- -CGCGcauuUGGACCUGCaACUG---GCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 61612 | 0.66 | 0.973378 |
Target: 5'- cGCGCGcuGGCUUGG-CGagaacUGAUCGCUa -3' miRNA: 3'- -CGCGCauUUGGACCuGCa----ACUGGCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 54358 | 0.66 | 0.973378 |
Target: 5'- cGCGCGcUGGuACC-GGuucacauacagcACGUcgGGCCGCCa -3' miRNA: 3'- -CGCGC-AUU-UGGaCC------------UGCAa-CUGGCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 85190 | 0.67 | 0.967488 |
Target: 5'- aGCGaGUAGuaCUGGAUGagccgacgGGCCGCCg -3' miRNA: 3'- -CGCgCAUUugGACCUGCaa------CUGGCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 37792 | 0.67 | 0.967488 |
Target: 5'- -gGCGguGACUUGGACGaguccuUUGACgaCGCCa -3' miRNA: 3'- cgCGCauUUGGACCUGC------AACUG--GCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 50129 | 0.67 | 0.953057 |
Target: 5'- cGCGCacGUAGcgcucuuccagcGCCUGGcGCGccuucugcaUGGCCGCCu -3' miRNA: 3'- -CGCG--CAUU------------UGGACC-UGCa--------ACUGGCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 66683 | 0.67 | 0.953057 |
Target: 5'- aGCGgGaugggAAugCUGcACG-UGACCGCCu -3' miRNA: 3'- -CGCgCa----UUugGACcUGCaACUGGCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 32784 | 0.67 | 0.953057 |
Target: 5'- cGCGCG---GCgUGGGCGggcGCCGCg -3' miRNA: 3'- -CGCGCauuUGgACCUGCaacUGGCGg -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 71921 | 0.67 | 0.953057 |
Target: 5'- uGCGCGUcgGCgaGcGCcUUGACCGCg -3' miRNA: 3'- -CGCGCAuuUGgaCcUGcAACUGGCGg -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 108006 | 0.67 | 0.959637 |
Target: 5'- aGCGCGU--GCUUGGugGggUaccuggucuacucgGGCCGCUu -3' miRNA: 3'- -CGCGCAuuUGGACCugCa-A--------------CUGGCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 108711 | 0.67 | 0.959637 |
Target: 5'- uGCGCGcAAACCcaaauccUGGACGcguuggaaaaacUGGCgCGCCa -3' miRNA: 3'- -CGCGCaUUUGG-------ACCUGCa-----------ACUG-GCGG- -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 9398 | 0.67 | 0.963196 |
Target: 5'- uCGCGUAAACUuuUGGGCGcguccauuuuaaacUUG-CCGCa -3' miRNA: 3'- cGCGCAUUUGG--ACCUGC--------------AACuGGCGg -5' |
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6731 | 3' | -52.6 | NC_001875.2 | + | 48497 | 0.67 | 0.96422 |
Target: 5'- aGCGCGUuaa--UGGACuauuUUGGCgCGCCg -3' miRNA: 3'- -CGCGCAuuuggACCUGc---AACUG-GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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