miRNA display CGI


Results 101 - 120 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6731 3' -52.6 NC_001875.2 + 44890 0.66 0.973378
Target:  5'- uGCGCc---GCUUGGACGcUGGCgcuCGCCc -3'
miRNA:   3'- -CGCGcauuUGGACCUGCaACUG---GCGG- -5'
6731 3' -52.6 NC_001875.2 + 61612 0.66 0.973378
Target:  5'- cGCGCGcuGGCUUGG-CGagaacUGAUCGCUa -3'
miRNA:   3'- -CGCGCauUUGGACCuGCa----ACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 54358 0.66 0.973378
Target:  5'- cGCGCGcUGGuACC-GGuucacauacagcACGUcgGGCCGCCa -3'
miRNA:   3'- -CGCGC-AUU-UGGaCC------------UGCAa-CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 128962 0.66 0.976014
Target:  5'- -gGCGUGAG-CUGGGCGagcggaUGACgCGCUc -3'
miRNA:   3'- cgCGCAUUUgGACCUGCa-----ACUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 70450 0.66 0.978454
Target:  5'- aCGCGUAcGCguacaUGGgaaacgGCGUUGGCUGUCg -3'
miRNA:   3'- cGCGCAUuUGg----ACC------UGCAACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 48497 0.67 0.96422
Target:  5'- aGCGCGUuaa--UGGACuauuUUGGCgCGCCg -3'
miRNA:   3'- -CGCGCAuuuggACCUGc---AACUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 9398 0.67 0.963196
Target:  5'- uCGCGUAAACUuuUGGGCGcguccauuuuaaacUUG-CCGCa -3'
miRNA:   3'- cGCGCAUUUGG--ACCUGC--------------AACuGGCGg -5'
6731 3' -52.6 NC_001875.2 + 108711 0.67 0.959637
Target:  5'- uGCGCGcAAACCcaaauccUGGACGcguuggaaaaacUGGCgCGCCa -3'
miRNA:   3'- -CGCGCaUUUGG-------ACCUGCa-----------ACUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 16261 0.68 0.929669
Target:  5'- cGCGCGUGcgucACgUGGugccCGgcGACCGCa -3'
miRNA:   3'- -CGCGCAUu---UGgACCu---GCaaCUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 98744 0.68 0.934838
Target:  5'- gGUGCGUGcucAGCC-GcGACGgc-GCCGCCa -3'
miRNA:   3'- -CGCGCAU---UUGGaC-CUGCaacUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 99343 0.68 0.939279
Target:  5'- aGCGuCGUGuccgcgcAACUUGGGCGc-GcCCGCCa -3'
miRNA:   3'- -CGC-GCAU-------UUGGACCUGCaaCuGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 47969 0.68 0.93976
Target:  5'- aGCGaCGagGAACCgugcgagcgGGGCGUcGAgCCGCCc -3'
miRNA:   3'- -CGC-GCa-UUUGGa--------CCUGCAaCU-GGCGG- -5'
6731 3' -52.6 NC_001875.2 + 51892 0.68 0.93976
Target:  5'- cGUGCGU--GCCUGaacGGCGUgaacgaggUGauGCCGCCg -3'
miRNA:   3'- -CGCGCAuuUGGAC---CUGCA--------AC--UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 42592 0.68 0.944435
Target:  5'- cGCGCGUcAGCUcGG-CGcUGggcACCGCCa -3'
miRNA:   3'- -CGCGCAuUUGGaCCuGCaAC---UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 66305 0.68 0.944889
Target:  5'- uGCGCGgccggcgaguugauGGCgUGGGCG---GCCGCCg -3'
miRNA:   3'- -CGCGCau------------UUGgACCUGCaacUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 33456 0.68 0.948867
Target:  5'- aGCGCGgccGGCCagUGGuCGaaagUGGCgCGCCg -3'
miRNA:   3'- -CGCGCau-UUGG--ACCuGCa---ACUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 50129 0.67 0.953057
Target:  5'- cGCGCacGUAGcgcucuuccagcGCCUGGcGCGccuucugcaUGGCCGCCu -3'
miRNA:   3'- -CGCG--CAUU------------UGGACC-UGCa--------ACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 66683 0.67 0.953057
Target:  5'- aGCGgGaugggAAugCUGcACG-UGACCGCCu -3'
miRNA:   3'- -CGCgCa----UUugGACcUGCaACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 32784 0.67 0.953057
Target:  5'- cGCGCG---GCgUGGGCGggcGCCGCg -3'
miRNA:   3'- -CGCGCauuUGgACCUGCaacUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 71921 0.67 0.953057
Target:  5'- uGCGCGUcgGCgaGcGCcUUGACCGCg -3'
miRNA:   3'- -CGCGCAuuUGgaCcUGcAACUGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.