Results 61 - 80 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6732 | 5' | -55.7 | NC_001875.2 | + | 70539 | 0.68 | 0.817326 |
Target: 5'- uCGACCUcGAC-AGCGgCGCGCaauuGCUGCa -3' miRNA: 3'- -GCUGGA-CUGcUUGUgGCGCG----CGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 618 | 0.68 | 0.816457 |
Target: 5'- aCGGCCUGugcaagcGCGAACACuCGC-CGgUGCa -3' miRNA: 3'- -GCUGGAC-------UGCUUGUG-GCGcGCgAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 102475 | 0.68 | 0.825926 |
Target: 5'- aCGAgCUGACGAGCGCgauuaguuCGgGCUACg -3' miRNA: 3'- -GCUgGACUGCUUGUGgc------GCgCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 31915 | 0.68 | 0.79054 |
Target: 5'- uGGCC--GCGcuGCACCGCGCGCggGCc -3' miRNA: 3'- gCUGGacUGCu-UGUGGCGCGCGa-UGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 32787 | 0.68 | 0.79054 |
Target: 5'- gCGGCgUgGGCGGGCGCCGCGC-CgGCa -3' miRNA: 3'- -GCUGgA-CUGCUUGUGGCGCGcGaUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 67127 | 0.68 | 0.825926 |
Target: 5'- cCGcCUUGGCcAGCGCCGUGuUGCUGCg -3' miRNA: 3'- -GCuGGACUGcUUGUGGCGC-GCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 117277 | 0.68 | 0.825926 |
Target: 5'- gCGGCCgaugcgcuucACGAugGCCGCGUGCgccaGCUc -3' miRNA: 3'- -GCUGGac--------UGCUugUGGCGCGCGa---UGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 21667 | 0.68 | 0.817326 |
Target: 5'- aCGACaaGGCGGAgGCCaaGCGCGC-ACUc -3' miRNA: 3'- -GCUGgaCUGCUUgUGG--CGCGCGaUGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 32125 | 0.68 | 0.817326 |
Target: 5'- gCGcACUUG-CGAGCGCCGCauaGCGCUcaACg -3' miRNA: 3'- -GC-UGGACuGCUUGUGGCG---CGCGA--UGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 37211 | 0.68 | 0.799624 |
Target: 5'- -aGCCUGGCGcAGCggugcagcaaGCCGCugccGCGCUACa -3' miRNA: 3'- gcUGGACUGC-UUG----------UGGCG----CGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 90354 | 0.68 | 0.816457 |
Target: 5'- cCGACCggccGGCGcAgaccacacaagacACGCCGCGCGCgccGCa -3' miRNA: 3'- -GCUGGa---CUGC-U-------------UGUGGCGCGCGa--UGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 61583 | 0.68 | 0.808556 |
Target: 5'- cCGACgagGugGAGguagcgcccgauCACCGCGCGCUGg- -3' miRNA: 3'- -GCUGga-CugCUU------------GUGGCGCGCGAUga -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 58621 | 0.68 | 0.808556 |
Target: 5'- -aGCCUGACGGcCAgUGCugagGCGCUGCa -3' miRNA: 3'- gcUGGACUGCUuGUgGCG----CGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 7005 | 0.68 | 0.808556 |
Target: 5'- uCGACgUGGCGcgccaguugcugGACguaagcgaggugGCCGCGCGCUugUc -3' miRNA: 3'- -GCUGgACUGC------------UUG------------UGGCGCGCGAugA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 5301 | 0.68 | 0.808556 |
Target: 5'- cCGcGCCcGACGAcCACUccauuGCGCGCUACc -3' miRNA: 3'- -GC-UGGaCUGCUuGUGG-----CGCGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 97732 | 0.68 | 0.808556 |
Target: 5'- aGACC--GCGAGCG-CGCGCGCUcguGCa -3' miRNA: 3'- gCUGGacUGCUUGUgGCGCGCGA---UGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 17091 | 0.68 | 0.808556 |
Target: 5'- aGGCCgGGCaa--GCCGCGCGCcACUg -3' miRNA: 3'- gCUGGaCUGcuugUGGCGCGCGaUGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 49949 | 0.68 | 0.799624 |
Target: 5'- ---gCUGGucgucgGAGCugCGCGCGCUGCUg -3' miRNA: 3'- gcugGACUg-----CUUGugGCGCGCGAUGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 126324 | 0.68 | 0.79054 |
Target: 5'- gCGGCC-GGCGuaaACUGCGCGCgUGCg -3' miRNA: 3'- -GCUGGaCUGCuugUGGCGCGCG-AUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 90021 | 0.68 | 0.79054 |
Target: 5'- cCGACCUcaaGAGCucGCCGCGCGCcauguUGCa -3' miRNA: 3'- -GCUGGAcugCUUG--UGGCGCGCG-----AUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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