Results 41 - 60 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6732 | 5' | -55.7 | NC_001875.2 | + | 110310 | 0.69 | 0.762456 |
Target: 5'- -cGCCcGACGAGCGCgaCGCGgUGCUGCg -3' miRNA: 3'- gcUGGaCUGCUUGUG--GCGC-GCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 60237 | 0.69 | 0.762456 |
Target: 5'- -aACaaaUGGCGAGCACgaGCGCGCUAg- -3' miRNA: 3'- gcUGg--ACUGCUUGUGg-CGCGCGAUga -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 52730 | 0.69 | 0.771003 |
Target: 5'- aCGAUC-GGCGGAuCGCCagcauuuGCGCGCUGCc -3' miRNA: 3'- -GCUGGaCUGCUU-GUGG-------CGCGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 74008 | 0.69 | 0.771946 |
Target: 5'- gGACCgGuACGAgaGCACCGCgGCGC-ACa -3' miRNA: 3'- gCUGGaC-UGCU--UGUGGCG-CGCGaUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 6780 | 0.69 | 0.743134 |
Target: 5'- cCGAUCgcugGcACGAguACACCGCGUGCgGCg -3' miRNA: 3'- -GCUGGa---C-UGCU--UGUGGCGCGCGaUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 108420 | 0.69 | 0.752849 |
Target: 5'- aCGAgC--GCGGGCACCGCGUGCUugGCc -3' miRNA: 3'- -GCUgGacUGCUUGUGGCGCGCGA--UGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 130552 | 0.69 | 0.762456 |
Target: 5'- gCGAcCCUGcuuuucggguGCGAACGCucucgaaaggCGCGUGCUACUu -3' miRNA: 3'- -GCU-GGAC----------UGCUUGUG----------GCGCGCGAUGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 32226 | 0.69 | 0.771946 |
Target: 5'- -aGCCUGcACGAGCGCCauuuugcgguacGCGCGCgcacGCUc -3' miRNA: 3'- gcUGGAC-UGCUUGUGG------------CGCGCGa---UGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 37211 | 0.68 | 0.799624 |
Target: 5'- -aGCCUGGCGcAGCggugcagcaaGCCGCugccGCGCUACa -3' miRNA: 3'- gcUGGACUGC-UUG----------UGGCG----CGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 117277 | 0.68 | 0.825926 |
Target: 5'- gCGGCCgaugcgcuucACGAugGCCGCGUGCgccaGCUc -3' miRNA: 3'- -GCUGGac--------UGCUugUGGCGCGCGa---UGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 67127 | 0.68 | 0.825926 |
Target: 5'- cCGcCUUGGCcAGCGCCGUGuUGCUGCg -3' miRNA: 3'- -GCuGGACUGcUUGUGGCGC-GCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 32787 | 0.68 | 0.79054 |
Target: 5'- gCGGCgUgGGCGGGCGCCGCGC-CgGCa -3' miRNA: 3'- -GCUGgA-CUGCUUGUGGCGCGcGaUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 90021 | 0.68 | 0.79054 |
Target: 5'- cCGACCUcaaGAGCucGCCGCGCGCcauguUGCa -3' miRNA: 3'- -GCUGGAcugCUUG--UGGCGCGCG-----AUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 126324 | 0.68 | 0.79054 |
Target: 5'- gCGGCC-GGCGuaaACUGCGCGCgUGCg -3' miRNA: 3'- -GCUGGaCUGCuugUGGCGCGCG-AUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 49949 | 0.68 | 0.799624 |
Target: 5'- ---gCUGGucgucgGAGCugCGCGCGCUGCUg -3' miRNA: 3'- gcugGACUg-----CUUGugGCGCGCGAUGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 37895 | 0.68 | 0.80767 |
Target: 5'- gCGGCuugCUGGCGcggcacuGGCACCGCGCGUguuggACg -3' miRNA: 3'- -GCUG---GACUGC-------UUGUGGCGCGCGa----UGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 16540 | 0.68 | 0.833514 |
Target: 5'- gCGugCaauacaaUGACGuGCGCgGCGCGCUAa- -3' miRNA: 3'- -GCugG-------ACUGCuUGUGgCGCGCGAUga -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 47676 | 0.68 | 0.817326 |
Target: 5'- gCGGCC--GCGGcGCGCCGCGCGUUuCUc -3' miRNA: 3'- -GCUGGacUGCU-UGUGGCGCGCGAuGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 32125 | 0.68 | 0.817326 |
Target: 5'- gCGcACUUG-CGAGCGCCGCauaGCGCUcaACg -3' miRNA: 3'- -GC-UGGACuGCUUGUGGCG---CGCGA--UGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 21667 | 0.68 | 0.817326 |
Target: 5'- aCGACaaGGCGGAgGCCaaGCGCGC-ACUc -3' miRNA: 3'- -GCUGgaCUGCUUgUGG--CGCGCGaUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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