miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 37211 0.68 0.799624
Target:  5'- -aGCCUGGCGcAGCggugcagcaaGCCGCugccGCGCUACa -3'
miRNA:   3'- gcUGGACUGC-UUG----------UGGCG----CGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 32125 0.68 0.817326
Target:  5'- gCGcACUUG-CGAGCGCCGCauaGCGCUcaACg -3'
miRNA:   3'- -GC-UGGACuGCUUGUGGCG---CGCGA--UGa -5'
6732 5' -55.7 NC_001875.2 + 90354 0.68 0.816457
Target:  5'- cCGACCggccGGCGcAgaccacacaagacACGCCGCGCGCgccGCa -3'
miRNA:   3'- -GCUGGa---CUGC-U-------------UGUGGCGCGCGa--UGa -5'
6732 5' -55.7 NC_001875.2 + 58621 0.68 0.808556
Target:  5'- -aGCCUGACGGcCAgUGCugagGCGCUGCa -3'
miRNA:   3'- gcUGGACUGCUuGUgGCG----CGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 7005 0.68 0.808556
Target:  5'- uCGACgUGGCGcgccaguugcugGACguaagcgaggugGCCGCGCGCUugUc -3'
miRNA:   3'- -GCUGgACUGC------------UUG------------UGGCGCGCGAugA- -5'
6732 5' -55.7 NC_001875.2 + 5301 0.68 0.808556
Target:  5'- cCGcGCCcGACGAcCACUccauuGCGCGCUACc -3'
miRNA:   3'- -GC-UGGaCUGCUuGUGG-----CGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 97732 0.68 0.808556
Target:  5'- aGACC--GCGAGCG-CGCGCGCUcguGCa -3'
miRNA:   3'- gCUGGacUGCUUGUgGCGCGCGA---UGa -5'
6732 5' -55.7 NC_001875.2 + 17091 0.68 0.808556
Target:  5'- aGGCCgGGCaa--GCCGCGCGCcACUg -3'
miRNA:   3'- gCUGGaCUGcuugUGGCGCGCGaUGA- -5'
6732 5' -55.7 NC_001875.2 + 117277 0.68 0.825926
Target:  5'- gCGGCCgaugcgcuucACGAugGCCGCGUGCgccaGCUc -3'
miRNA:   3'- -GCUGGac--------UGCUugUGGCGCGCGa---UGA- -5'
6732 5' -55.7 NC_001875.2 + 67127 0.68 0.825926
Target:  5'- cCGcCUUGGCcAGCGCCGUGuUGCUGCg -3'
miRNA:   3'- -GCuGGACUGcUUGUGGCGC-GCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 16540 0.68 0.833514
Target:  5'- gCGugCaauacaaUGACGuGCGCgGCGCGCUAa- -3'
miRNA:   3'- -GCugG-------ACUGCuUGUGgCGCGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 49949 0.68 0.799624
Target:  5'- ---gCUGGucgucgGAGCugCGCGCGCUGCUg -3'
miRNA:   3'- gcugGACUg-----CUUGugGCGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 102475 0.68 0.825926
Target:  5'- aCGAgCUGACGAGCGCgauuaguuCGgGCUACg -3'
miRNA:   3'- -GCUgGACUGCUUGUGgc------GCgCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 95595 0.68 0.825926
Target:  5'- gGACCUGGUGGACGacaCGgGCGCcGCg -3'
miRNA:   3'- gCUGGACUGCUUGUg--GCgCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 96483 0.68 0.817326
Target:  5'- cCGGCa--ACGGGCgGCCGCGCGUUAUa -3'
miRNA:   3'- -GCUGgacUGCUUG-UGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 37895 0.68 0.80767
Target:  5'- gCGGCuugCUGGCGcggcacuGGCACCGCGCGUguuggACg -3'
miRNA:   3'- -GCUG---GACUGC-------UUGUGGCGCGCGa----UGa -5'
6732 5' -55.7 NC_001875.2 + 73738 0.67 0.866105
Target:  5'- cCGACCUGuACGAcgcuaACAaCGUGCGC-ACg -3'
miRNA:   3'- -GCUGGAC-UGCU-----UGUgGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 4459 0.67 0.873528
Target:  5'- uGGCCaGGCucuGAGCGCCGUccGCGCaUGCUu -3'
miRNA:   3'- gCUGGaCUG---CUUGUGGCG--CGCG-AUGA- -5'
6732 5' -55.7 NC_001875.2 + 7424 0.67 0.873528
Target:  5'- gGGCCcaacGACGAggGCaACUGCGCGCcgGCg -3'
miRNA:   3'- gCUGGa---CUGCU--UG-UGGCGCGCGa-UGa -5'
6732 5' -55.7 NC_001875.2 + 40684 0.67 0.842584
Target:  5'- gGACCaUGACGcGGCgcauuuggaaccGCCGCGCGC-GCg -3'
miRNA:   3'- gCUGG-ACUGC-UUG------------UGGCGCGCGaUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.