miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 97732 0.68 0.808556
Target:  5'- aGACC--GCGAGCG-CGCGCGCUcguGCa -3'
miRNA:   3'- gCUGGacUGCUUGUgGCGCGCGA---UGa -5'
6732 5' -55.7 NC_001875.2 + 17091 0.68 0.808556
Target:  5'- aGGCCgGGCaa--GCCGCGCGCcACUg -3'
miRNA:   3'- gCUGGaCUGcuugUGGCGCGCGaUGA- -5'
6732 5' -55.7 NC_001875.2 + 618 0.68 0.816457
Target:  5'- aCGGCCUGugcaagcGCGAACACuCGC-CGgUGCa -3'
miRNA:   3'- -GCUGGAC-------UGCUUGUG-GCGcGCgAUGa -5'
6732 5' -55.7 NC_001875.2 + 90354 0.68 0.816457
Target:  5'- cCGACCggccGGCGcAgaccacacaagacACGCCGCGCGCgccGCa -3'
miRNA:   3'- -GCUGGa---CUGC-U-------------UGUGGCGCGCGa--UGa -5'
6732 5' -55.7 NC_001875.2 + 47676 0.68 0.817326
Target:  5'- gCGGCC--GCGGcGCGCCGCGCGUUuCUc -3'
miRNA:   3'- -GCUGGacUGCU-UGUGGCGCGCGAuGA- -5'
6732 5' -55.7 NC_001875.2 + 32125 0.68 0.817326
Target:  5'- gCGcACUUG-CGAGCGCCGCauaGCGCUcaACg -3'
miRNA:   3'- -GC-UGGACuGCUUGUGGCG---CGCGA--UGa -5'
6732 5' -55.7 NC_001875.2 + 21667 0.68 0.817326
Target:  5'- aCGACaaGGCGGAgGCCaaGCGCGC-ACUc -3'
miRNA:   3'- -GCUGgaCUGCUUgUGG--CGCGCGaUGA- -5'
6732 5' -55.7 NC_001875.2 + 96483 0.68 0.817326
Target:  5'- cCGGCa--ACGGGCgGCCGCGCGUUAUa -3'
miRNA:   3'- -GCUGgacUGCUUG-UGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 7519 0.68 0.817326
Target:  5'- cCGAUCcGGCGGGCACUGCaccGCagGCUACa -3'
miRNA:   3'- -GCUGGaCUGCUUGUGGCG---CG--CGAUGa -5'
6732 5' -55.7 NC_001875.2 + 70539 0.68 0.817326
Target:  5'- uCGACCUcGAC-AGCGgCGCGCaauuGCUGCa -3'
miRNA:   3'- -GCUGGA-CUGcUUGUgGCGCG----CGAUGa -5'
6732 5' -55.7 NC_001875.2 + 67127 0.68 0.825926
Target:  5'- cCGcCUUGGCcAGCGCCGUGuUGCUGCg -3'
miRNA:   3'- -GCuGGACUGcUUGUGGCGC-GCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 95595 0.68 0.825926
Target:  5'- gGACCUGGUGGACGacaCGgGCGCcGCg -3'
miRNA:   3'- gCUGGACUGCUUGUg--GCgCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 102475 0.68 0.825926
Target:  5'- aCGAgCUGACGAGCGCgauuaguuCGgGCUACg -3'
miRNA:   3'- -GCUgGACUGCUUGUGgc------GCgCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 117277 0.68 0.825926
Target:  5'- gCGGCCgaugcgcuucACGAugGCCGCGUGCgccaGCUc -3'
miRNA:   3'- -GCUGGac--------UGCUugUGGCGCGCGa---UGA- -5'
6732 5' -55.7 NC_001875.2 + 16540 0.68 0.833514
Target:  5'- gCGugCaauacaaUGACGuGCGCgGCGCGCUAa- -3'
miRNA:   3'- -GCugG-------ACUGCuUGUGgCGCGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 110171 0.68 0.834348
Target:  5'- gCGcCaCUGGuCGAGCugCGCGCGCg--- -3'
miRNA:   3'- -GCuG-GACU-GCUUGugGCGCGCGauga -5'
6732 5' -55.7 NC_001875.2 + 43110 0.67 0.842584
Target:  5'- ---gUUGGCGcGCugCGCGgGCUGCUg -3'
miRNA:   3'- gcugGACUGCuUGugGCGCgCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 42716 0.67 0.842584
Target:  5'- cCGACCUGGCGcg-GCUGgGCGCgACc -3'
miRNA:   3'- -GCUGGACUGCuugUGGCgCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 40684 0.67 0.842584
Target:  5'- gGACCaUGACGcGGCgcauuuggaaccGCCGCGCGC-GCg -3'
miRNA:   3'- gCUGG-ACUGC-UUG------------UGGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 77203 0.67 0.842584
Target:  5'- -aACCgGGCGGcacuaGCACCGCGaCGCgGCUg -3'
miRNA:   3'- gcUGGaCUGCU-----UGUGGCGC-GCGaUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.