Results 81 - 100 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6732 | 5' | -55.7 | NC_001875.2 | + | 42716 | 0.67 | 0.842584 |
Target: 5'- cCGACCUGGCGcg-GCUGgGCGCgACc -3' miRNA: 3'- -GCUGGACUGCuugUGGCgCGCGaUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 39270 | 0.67 | 0.849831 |
Target: 5'- gCGACgCggGGCGGcuucugcccgccgACACCaaguGCGCGCUGCa -3' miRNA: 3'- -GCUG-Ga-CUGCU-------------UGUGG----CGCGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 42595 | 0.67 | 0.850626 |
Target: 5'- gCGGCCgcUGACGcAgGCguuUGCGUGCUGCUa -3' miRNA: 3'- -GCUGG--ACUGCuUgUG---GCGCGCGAUGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 120320 | 0.67 | 0.850626 |
Target: 5'- aCGGCCgcgGGCGAACugcuguuguuGCCGU-UGCUGCUg -3' miRNA: 3'- -GCUGGa--CUGCUUG----------UGGCGcGCGAUGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 57400 | 0.67 | 0.850626 |
Target: 5'- gGACCccuccacgcUGACGAccaACAUCGCGCccgugauggcguGCUACg -3' miRNA: 3'- gCUGG---------ACUGCU---UGUGGCGCG------------CGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 38650 | 0.67 | 0.850626 |
Target: 5'- cCGACUcGcCG--UACCGCGUGCUGCUc -3' miRNA: 3'- -GCUGGaCuGCuuGUGGCGCGCGAUGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 8504 | 0.67 | 0.850626 |
Target: 5'- cCGuCCgUGugG-GCGCCGCGCaCUGCa -3' miRNA: 3'- -GCuGG-ACugCuUGUGGCGCGcGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 113733 | 0.67 | 0.858469 |
Target: 5'- cCGugCUGGCccaauggcGCGCCGUGCGCgaccGCg -3' miRNA: 3'- -GCugGACUGcu------UGUGGCGCGCGa---UGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 81510 | 0.67 | 0.858469 |
Target: 5'- gCGGCC-GGCGcgugcgcgcGGCACCaGCGCGCcGCg -3' miRNA: 3'- -GCUGGaCUGC---------UUGUGG-CGCGCGaUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 71604 | 0.67 | 0.858469 |
Target: 5'- aGGCgUGGCGGACAUCaaGCGCgaGCUc -3' miRNA: 3'- gCUGgACUGCUUGUGGcgCGCGa-UGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 51905 | 0.67 | 0.866105 |
Target: 5'- aCGGCgUGaACGAggugAUGCCGC-CGCUGCa -3' miRNA: 3'- -GCUGgAC-UGCU----UGUGGCGcGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 73738 | 0.67 | 0.866105 |
Target: 5'- cCGACCUGuACGAcgcuaACAaCGUGCGC-ACg -3' miRNA: 3'- -GCUGGAC-UGCU-----UGUgGCGCGCGaUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 108833 | 0.67 | 0.866105 |
Target: 5'- gCGGCU--GCGGGCACgGCG-GCUGCg -3' miRNA: 3'- -GCUGGacUGCUUGUGgCGCgCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 4459 | 0.67 | 0.873528 |
Target: 5'- uGGCCaGGCucuGAGCGCCGUccGCGCaUGCUu -3' miRNA: 3'- gCUGGaCUG---CUUGUGGCG--CGCG-AUGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 42364 | 0.67 | 0.873528 |
Target: 5'- aGcACCacGCGugcCGCCGCGCGCUAUUu -3' miRNA: 3'- gC-UGGacUGCuu-GUGGCGCGCGAUGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 7424 | 0.67 | 0.873528 |
Target: 5'- gGGCCcaacGACGAggGCaACUGCGCGCcgGCg -3' miRNA: 3'- gCUGGa---CUGCU--UG-UGGCGCGCGa-UGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 68840 | 0.66 | 0.880021 |
Target: 5'- -uGCCUGGCGGacgggucGCACgCGUGCGCg--- -3' miRNA: 3'- gcUGGACUGCU-------UGUG-GCGCGCGauga -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 128776 | 0.66 | 0.880732 |
Target: 5'- gCGACCccGGCGcgcCGCUGCGCGCcucuUACg -3' miRNA: 3'- -GCUGGa-CUGCuu-GUGGCGCGCG----AUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 35807 | 0.66 | 0.880732 |
Target: 5'- -uGCCUGAUGGccGCGCaCuuGCGCUGCg -3' miRNA: 3'- gcUGGACUGCU--UGUG-GcgCGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 53874 | 0.66 | 0.880732 |
Target: 5'- uCGGCCUGuuggucguGCGGcCGCCGCgGCGCa--- -3' miRNA: 3'- -GCUGGAC--------UGCUuGUGGCG-CGCGauga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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