miRNA display CGI


Results 101 - 120 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 100617 0.66 0.88144
Target:  5'- gCGGCCgcuguuugccucgugGAUGAGCAgCGUGCGCg--- -3'
miRNA:   3'- -GCUGGa--------------CUGCUUGUgGCGCGCGauga -5'
6732 5' -55.7 NC_001875.2 + 107484 0.66 0.885642
Target:  5'- aCGACCacGACGGguaucuggagcugaACGCCGCGgcaCGCUugUu -3'
miRNA:   3'- -GCUGGa-CUGCU--------------UGUGGCGC---GCGAugA- -5'
6732 5' -55.7 NC_001875.2 + 34517 0.66 0.887713
Target:  5'- aCGGCagcaaCUG-CGucucuuGCGCCGCGCGCuUGCUc -3'
miRNA:   3'- -GCUG-----GACuGCu-----UGUGGCGCGCG-AUGA- -5'
6732 5' -55.7 NC_001875.2 + 48814 0.66 0.887713
Target:  5'- aGugCUaACauGCuCCGCGCGCUACg -3'
miRNA:   3'- gCugGAcUGcuUGuGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 43578 0.66 0.887713
Target:  5'- uGGCCgagGACGGcACGCaCGCGCaaauCUGCUu -3'
miRNA:   3'- gCUGGa--CUGCU-UGUG-GCGCGc---GAUGA- -5'
6732 5' -55.7 NC_001875.2 + 44763 0.66 0.887713
Target:  5'- uCGugCUGguuggggaACGAGCGCCGC-UGCuUGCUa -3'
miRNA:   3'- -GCugGAC--------UGCUUGUGGCGcGCG-AUGA- -5'
6732 5' -55.7 NC_001875.2 + 6952 0.66 0.894466
Target:  5'- gCGugCgccGCGAcauCGCCacgGCGCGCUGCUu -3'
miRNA:   3'- -GCugGac-UGCUu--GUGG---CGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 23796 0.66 0.894466
Target:  5'- gGGCCUcGGCGAGCACC-CGCuCaGCa -3'
miRNA:   3'- gCUGGA-CUGCUUGUGGcGCGcGaUGa -5'
6732 5' -55.7 NC_001875.2 + 48082 0.66 0.894466
Target:  5'- -cGCCUGuuGcAGCACguaCGCGUGCUGCg -3'
miRNA:   3'- gcUGGACugC-UUGUG---GCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 15889 0.66 0.894466
Target:  5'- aCGugCauUGcCGAAgACC-CGCGCUACUu -3'
miRNA:   3'- -GCugG--ACuGCUUgUGGcGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 107392 0.66 0.899056
Target:  5'- uGACaUGGCGAACGCCGauucgcucgacgccCGCGCg--- -3'
miRNA:   3'- gCUGgACUGCUUGUGGC--------------GCGCGauga -5'
6732 5' -55.7 NC_001875.2 + 120661 0.66 0.900987
Target:  5'- aCGAUUUGGCGAGuguCUGCGCgGUUGCg -3'
miRNA:   3'- -GCUGGACUGCUUgu-GGCGCG-CGAUGa -5'
6732 5' -55.7 NC_001875.2 + 45391 0.66 0.900987
Target:  5'- aCGACaaGGCGAcGCGCCGCcuguucGCGCgcgACg -3'
miRNA:   3'- -GCUGgaCUGCU-UGUGGCG------CGCGa--UGa -5'
6732 5' -55.7 NC_001875.2 + 129189 0.66 0.900987
Target:  5'- aGGUCUGGCGAGCGCgaGCGCGgCgACg -3'
miRNA:   3'- gCUGGACUGCUUGUGg-CGCGC-GaUGa -5'
6732 5' -55.7 NC_001875.2 + 83410 0.66 0.900987
Target:  5'- -cGCCaUGGCGccgcaaaACUGCGCGCUGCc -3'
miRNA:   3'- gcUGG-ACUGCuug----UGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 72557 0.66 0.900987
Target:  5'- gGGCgCUG-CGGGCGCgggcgCGgGCGCUGCg -3'
miRNA:   3'- gCUG-GACuGCUUGUG-----GCgCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 5088 0.66 0.900987
Target:  5'- uCGACCaccuaaugGGGCugCGCGCGCUAa- -3'
miRNA:   3'- -GCUGGacug----CUUGugGCGCGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 7263 0.66 0.900987
Target:  5'- gCGGCCUGGCGcggguCGCCGaCGUGUUu-- -3'
miRNA:   3'- -GCUGGACUGCuu---GUGGC-GCGCGAuga -5'
6732 5' -55.7 NC_001875.2 + 85206 0.66 0.900987
Target:  5'- uGAgCcGACGGGcCGCCGCGCGgUAg- -3'
miRNA:   3'- gCUgGaCUGCUU-GUGGCGCGCgAUga -5'
6732 5' -55.7 NC_001875.2 + 88414 0.66 0.905413
Target:  5'- uCG-UCUGACGAguacggcggcagcgGCGgCGCGCGCcGCUu -3'
miRNA:   3'- -GCuGGACUGCU--------------UGUgGCGCGCGaUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.