miRNA display CGI


Results 121 - 131 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 42869 0.66 0.906656
Target:  5'- aCGACCgGgugcgccuugcguACGAA-ACCGCGCGCcGCg -3'
miRNA:   3'- -GCUGGaC-------------UGCUUgUGGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 50147 0.66 0.907274
Target:  5'- -aACCgcGACaAGCGCCGCGUcaGCUACa -3'
miRNA:   3'- gcUGGa-CUGcUUGUGGCGCG--CGAUGa -5'
6732 5' -55.7 NC_001875.2 + 128870 0.66 0.907274
Target:  5'- aGACCUGggcgGCGAAgccCGCUGCGCGg-ACg -3'
miRNA:   3'- gCUGGAC----UGCUU---GUGGCGCGCgaUGa -5'
6732 5' -55.7 NC_001875.2 + 40104 0.66 0.907274
Target:  5'- gCGGCggGuCGGGCaACCGCGCGCa--- -3'
miRNA:   3'- -GCUGgaCuGCUUG-UGGCGCGCGauga -5'
6732 5' -55.7 NC_001875.2 + 26241 0.66 0.907274
Target:  5'- uGAUUUGAgaaaCGuGACGCC-CGCGCUGCa -3'
miRNA:   3'- gCUGGACU----GC-UUGUGGcGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 41237 0.66 0.907274
Target:  5'- aCGGCCU--CGGcCGUCGCGUGCUACa -3'
miRNA:   3'- -GCUGGAcuGCUuGUGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 93669 0.66 0.907274
Target:  5'- aCGACCUGcguCGGGCGCU-CGCGUUcACg -3'
miRNA:   3'- -GCUGGACu--GCUUGUGGcGCGCGA-UGa -5'
6732 5' -55.7 NC_001875.2 + 70621 0.66 0.911533
Target:  5'- uGGCCUGccccgaacauuuguACGAcgGCGCCGCGUuuGCgUGCa -3'
miRNA:   3'- gCUGGAC--------------UGCU--UGUGGCGCG--CG-AUGa -5'
6732 5' -55.7 NC_001875.2 + 130465 0.66 0.913322
Target:  5'- gGGCgCUcuCGAACGgCGCGUGCUAUUu -3'
miRNA:   3'- gCUG-GAcuGCUUGUgGCGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 95736 0.66 0.913322
Target:  5'- uGAgC-GGCGccgcCGCCGCGUGCUGCc -3'
miRNA:   3'- gCUgGaCUGCuu--GUGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 122410 0.66 0.913322
Target:  5'- uGGCCUGcgguuaGCGGugGgCGCGUGCaACg -3'
miRNA:   3'- gCUGGAC------UGCUugUgGCGCGCGaUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.