miRNA display CGI


Results 81 - 100 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 90021 0.68 0.79054
Target:  5'- cCGACCUcaaGAGCucGCCGCGCGCcauguUGCa -3'
miRNA:   3'- -GCUGGAcugCUUG--UGGCGCGCG-----AUGa -5'
6732 5' -55.7 NC_001875.2 + 126324 0.68 0.79054
Target:  5'- gCGGCC-GGCGuaaACUGCGCGCgUGCg -3'
miRNA:   3'- -GCUGGaCUGCuugUGGCGCGCG-AUGa -5'
6732 5' -55.7 NC_001875.2 + 31915 0.68 0.79054
Target:  5'- uGGCC--GCGcuGCACCGCGCGCggGCc -3'
miRNA:   3'- gCUGGacUGCu-UGUGGCGCGCGa-UGa -5'
6732 5' -55.7 NC_001875.2 + 32226 0.69 0.771946
Target:  5'- -aGCCUGcACGAGCGCCauuuugcgguacGCGCGCgcacGCUc -3'
miRNA:   3'- gcUGGAC-UGCUUGUGG------------CGCGCGa---UGA- -5'
6732 5' -55.7 NC_001875.2 + 74008 0.69 0.771946
Target:  5'- gGACCgGuACGAgaGCACCGCgGCGC-ACa -3'
miRNA:   3'- gCUGGaC-UGCU--UGUGGCG-CGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 52730 0.69 0.771003
Target:  5'- aCGAUC-GGCGGAuCGCCagcauuuGCGCGCUGCc -3'
miRNA:   3'- -GCUGGaCUGCUU-GUGG-------CGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 110310 0.69 0.762456
Target:  5'- -cGCCcGACGAGCGCgaCGCGgUGCUGCg -3'
miRNA:   3'- gcUGGaCUGCUUGUG--GCGC-GCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 60237 0.69 0.762456
Target:  5'- -aACaaaUGGCGAGCACgaGCGCGCUAg- -3'
miRNA:   3'- gcUGg--ACUGCUUGUGg-CGCGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 130552 0.69 0.762456
Target:  5'- gCGAcCCUGcuuuucggguGCGAACGCucucgaaaggCGCGUGCUACUu -3'
miRNA:   3'- -GCU-GGAC----------UGCUUGUG----------GCGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 108420 0.69 0.752849
Target:  5'- aCGAgC--GCGGGCACCGCGUGCUugGCc -3'
miRNA:   3'- -GCUgGacUGCUUGUGGCGCGCGA--UGa -5'
6732 5' -55.7 NC_001875.2 + 6780 0.69 0.743134
Target:  5'- cCGAUCgcugGcACGAguACACCGCGUGCgGCg -3'
miRNA:   3'- -GCUGGa---C-UGCU--UGUGGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 44529 0.69 0.743134
Target:  5'- uCGGCCaccaUGGCGuaaucgacguugGGCAgCCGCGCGUUGCg -3'
miRNA:   3'- -GCUGG----ACUGC------------UUGU-GGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 38457 0.7 0.737257
Target:  5'- cCGGCCUugucGGCGcuCGCCaccgcgucgucguacGCGCGCUGCg -3'
miRNA:   3'- -GCUGGA----CUGCuuGUGG---------------CGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 71918 0.7 0.733321
Target:  5'- gCGugCgcgucGGCGAGCgccuugACCGCGCGCUccGCg -3'
miRNA:   3'- -GCugGa----CUGCUUG------UGGCGCGCGA--UGa -5'
6732 5' -55.7 NC_001875.2 + 33525 0.7 0.733321
Target:  5'- aCGGCCUGcuucuuuuGCGAcUGCCGCGUGCgugauugGCUg -3'
miRNA:   3'- -GCUGGAC--------UGCUuGUGGCGCGCGa------UGA- -5'
6732 5' -55.7 NC_001875.2 + 61540 0.7 0.723419
Target:  5'- gCGGCCaucaUGugGGACACgGUGCGUUGg- -3'
miRNA:   3'- -GCUGG----ACugCUUGUGgCGCGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 44001 0.7 0.723419
Target:  5'- -aGCCcGACGGGCGCCGUGCccaGCgUGCUg -3'
miRNA:   3'- gcUGGaCUGCUUGUGGCGCG---CG-AUGA- -5'
6732 5' -55.7 NC_001875.2 + 23932 0.7 0.723419
Target:  5'- gCGACCUGggcaACGuGCGCUcuGCGgGCUGCa -3'
miRNA:   3'- -GCUGGAC----UGCuUGUGG--CGCgCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 85435 0.7 0.719436
Target:  5'- gGACgUGuccacauccacguCGGACACCGUGuCGCUGCa -3'
miRNA:   3'- gCUGgACu------------GCUUGUGGCGC-GCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 129532 0.7 0.713439
Target:  5'- cCGAgCUGGcCGAGCugCGCGCGgCcACg -3'
miRNA:   3'- -GCUgGACU-GCUUGugGCGCGC-GaUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.