miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 39270 0.67 0.849831
Target:  5'- gCGACgCggGGCGGcuucugcccgccgACACCaaguGCGCGCUGCa -3'
miRNA:   3'- -GCUG-Ga-CUGCU-------------UGUGG----CGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 40104 0.66 0.907274
Target:  5'- gCGGCggGuCGGGCaACCGCGCGCa--- -3'
miRNA:   3'- -GCUGgaCuGCUUG-UGGCGCGCGauga -5'
6732 5' -55.7 NC_001875.2 + 40684 0.67 0.842584
Target:  5'- gGACCaUGACGcGGCgcauuuggaaccGCCGCGCGC-GCg -3'
miRNA:   3'- gCUGG-ACUGC-UUG------------UGGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 41237 0.66 0.907274
Target:  5'- aCGGCCU--CGGcCGUCGCGUGCUACa -3'
miRNA:   3'- -GCUGGAcuGCUuGUGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 42364 0.67 0.873528
Target:  5'- aGcACCacGCGugcCGCCGCGCGCUAUUu -3'
miRNA:   3'- gC-UGGacUGCuu-GUGGCGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 42595 0.67 0.850626
Target:  5'- gCGGCCgcUGACGcAgGCguuUGCGUGCUGCUa -3'
miRNA:   3'- -GCUGG--ACUGCuUgUG---GCGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 42716 0.67 0.842584
Target:  5'- cCGACCUGGCGcg-GCUGgGCGCgACc -3'
miRNA:   3'- -GCUGGACUGCuugUGGCgCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 42869 0.66 0.906656
Target:  5'- aCGACCgGgugcgccuugcguACGAA-ACCGCGCGCcGCg -3'
miRNA:   3'- -GCUGGaC-------------UGCUUgUGGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 43011 0.7 0.703388
Target:  5'- uGGCCUccauuGCGAGUGCCGCGCGCcGCg -3'
miRNA:   3'- gCUGGAc----UGCUUGUGGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 43012 0.73 0.560248
Target:  5'- gGACCUGcgccuGCGGcGCGCCggauuuGCGCGCUACg -3'
miRNA:   3'- gCUGGAC-----UGCU-UGUGG------CGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 43110 0.67 0.842584
Target:  5'- ---gUUGGCGcGCugCGCGgGCUGCUg -3'
miRNA:   3'- gcugGACUGCuUGugGCGCgCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 43578 0.66 0.887713
Target:  5'- uGGCCgagGACGGcACGCaCGCGCaaauCUGCUu -3'
miRNA:   3'- gCUGGa--CUGCU-UGUG-GCGCGc---GAUGA- -5'
6732 5' -55.7 NC_001875.2 + 44001 0.7 0.723419
Target:  5'- -aGCCcGACGGGCGCCGUGCccaGCgUGCUg -3'
miRNA:   3'- gcUGGaCUGCUUGUGGCGCG---CG-AUGA- -5'
6732 5' -55.7 NC_001875.2 + 44529 0.69 0.743134
Target:  5'- uCGGCCaccaUGGCGuaaucgacguugGGCAgCCGCGCGUUGCg -3'
miRNA:   3'- -GCUGG----ACUGC------------UUGU-GGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 44615 0.71 0.672907
Target:  5'- aCGACUUGGCGcacuGCGCCGacgGCGCcuUGCUg -3'
miRNA:   3'- -GCUGGACUGCu---UGUGGCg--CGCG--AUGA- -5'
6732 5' -55.7 NC_001875.2 + 44763 0.66 0.887713
Target:  5'- uCGugCUGguuggggaACGAGCGCCGC-UGCuUGCUa -3'
miRNA:   3'- -GCugGAC--------UGCUUGUGGCGcGCG-AUGA- -5'
6732 5' -55.7 NC_001875.2 + 45391 0.66 0.900987
Target:  5'- aCGACaaGGCGAcGCGCCGCcuguucGCGCgcgACg -3'
miRNA:   3'- -GCUGgaCUGCU-UGUGGCG------CGCGa--UGa -5'
6732 5' -55.7 NC_001875.2 + 47676 0.68 0.817326
Target:  5'- gCGGCC--GCGGcGCGCCGCGCGUUuCUc -3'
miRNA:   3'- -GCUGGacUGCU-UGUGGCGCGCGAuGA- -5'
6732 5' -55.7 NC_001875.2 + 48082 0.66 0.894466
Target:  5'- -cGCCUGuuGcAGCACguaCGCGUGCUGCg -3'
miRNA:   3'- gcUGGACugC-UUGUG---GCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 48814 0.66 0.887713
Target:  5'- aGugCUaACauGCuCCGCGCGCUACg -3'
miRNA:   3'- gCugGAcUGcuUGuGGCGCGCGAUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.