Results 61 - 80 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6732 | 5' | -55.7 | NC_001875.2 | + | 49949 | 0.68 | 0.799624 |
Target: 5'- ---gCUGGucgucgGAGCugCGCGCGCUGCUg -3' miRNA: 3'- gcugGACUg-----CUUGugGCGCGCGAUGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 50147 | 0.66 | 0.907274 |
Target: 5'- -aACCgcGACaAGCGCCGCGUcaGCUACa -3' miRNA: 3'- gcUGGa-CUGcUUGUGGCGCG--CGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 51542 | 0.73 | 0.560248 |
Target: 5'- -aGCgCUGGCGAacACGCCGaCGCGCUugUc -3' miRNA: 3'- gcUG-GACUGCU--UGUGGC-GCGCGAugA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 51905 | 0.67 | 0.866105 |
Target: 5'- aCGGCgUGaACGAggugAUGCCGC-CGCUGCa -3' miRNA: 3'- -GCUGgAC-UGCU----UGUGGCGcGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 52730 | 0.69 | 0.771003 |
Target: 5'- aCGAUC-GGCGGAuCGCCagcauuuGCGCGCUGCc -3' miRNA: 3'- -GCUGGaCUGCUU-GUGG-------CGCGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 53874 | 0.66 | 0.880732 |
Target: 5'- uCGGCCUGuuggucguGCGGcCGCCGCgGCGCa--- -3' miRNA: 3'- -GCUGGAC--------UGCUuGUGGCG-CGCGauga -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 56455 | 0.71 | 0.621546 |
Target: 5'- aGGCCggUGGCGGGguCCGCGCGCg--- -3' miRNA: 3'- gCUGG--ACUGCUUguGGCGCGCGauga -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 57400 | 0.67 | 0.850626 |
Target: 5'- gGACCccuccacgcUGACGAccaACAUCGCGCccgugauggcguGCUACg -3' miRNA: 3'- gCUGG---------ACUGCU---UGUGGCGCG------------CGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 57504 | 0.68 | 0.799624 |
Target: 5'- aCGuACUUG-CGGuuuCGCCGCGCGCaGCg -3' miRNA: 3'- -GC-UGGACuGCUu--GUGGCGCGCGaUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 58621 | 0.68 | 0.808556 |
Target: 5'- -aGCCUGACGGcCAgUGCugagGCGCUGCa -3' miRNA: 3'- gcUGGACUGCUuGUgGCG----CGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 60237 | 0.69 | 0.762456 |
Target: 5'- -aACaaaUGGCGAGCACgaGCGCGCUAg- -3' miRNA: 3'- gcUGg--ACUGCUUGUGg-CGCGCGAUga -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 61540 | 0.7 | 0.723419 |
Target: 5'- gCGGCCaucaUGugGGACACgGUGCGUUGg- -3' miRNA: 3'- -GCUGG----ACugCUUGUGgCGCGCGAUga -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 61583 | 0.68 | 0.808556 |
Target: 5'- cCGACgagGugGAGguagcgcccgauCACCGCGCGCUGg- -3' miRNA: 3'- -GCUGga-CugCUU------------GUGGCGCGCGAUga -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 63856 | 0.77 | 0.324695 |
Target: 5'- gCGACCgacaaaccgcaucGGCGAACGCUGCGCGCcGCg -3' miRNA: 3'- -GCUGGa------------CUGCUUGUGGCGCGCGaUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 66036 | 0.72 | 0.610239 |
Target: 5'- -cGCUUGGCGccgcgcaGGCACCGCGCGCcgACg -3' miRNA: 3'- gcUGGACUGC-------UUGUGGCGCGCGa-UGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 66236 | 0.73 | 0.51931 |
Target: 5'- gCGACCUGagccggcggcuggGCGAGCA-CGCGCGCgGCg -3' miRNA: 3'- -GCUGGAC-------------UGCUUGUgGCGCGCGaUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 67127 | 0.68 | 0.825926 |
Target: 5'- cCGcCUUGGCcAGCGCCGUGuUGCUGCg -3' miRNA: 3'- -GCuGGACUGcUUGUGGCGC-GCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 68840 | 0.66 | 0.880021 |
Target: 5'- -uGCCUGGCGGacgggucGCACgCGUGCGCg--- -3' miRNA: 3'- gcUGGACUGCU-------UGUG-GCGCGCGauga -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 70539 | 0.68 | 0.817326 |
Target: 5'- uCGACCUcGAC-AGCGgCGCGCaauuGCUGCa -3' miRNA: 3'- -GCUGGA-CUGcUUGUgGCGCG----CGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 70621 | 0.66 | 0.911533 |
Target: 5'- uGGCCUGccccgaacauuuguACGAcgGCGCCGCGUuuGCgUGCa -3' miRNA: 3'- gCUGGAC--------------UGCU--UGUGGCGCG--CG-AUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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