miRNA display CGI


Results 81 - 100 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 71604 0.67 0.858469
Target:  5'- aGGCgUGGCGGACAUCaaGCGCgaGCUc -3'
miRNA:   3'- gCUGgACUGCUUGUGGcgCGCGa-UGA- -5'
6732 5' -55.7 NC_001875.2 + 71918 0.7 0.733321
Target:  5'- gCGugCgcgucGGCGAGCgccuugACCGCGCGCUccGCg -3'
miRNA:   3'- -GCugGa----CUGCUUG------UGGCGCGCGA--UGa -5'
6732 5' -55.7 NC_001875.2 + 72375 0.74 0.481507
Target:  5'- uGGCggaUUGGCGGACGCCGCGuCGCUGg- -3'
miRNA:   3'- gCUG---GACUGCUUGUGGCGC-GCGAUga -5'
6732 5' -55.7 NC_001875.2 + 72557 0.66 0.900987
Target:  5'- gGGCgCUG-CGGGCGCgggcgCGgGCGCUGCg -3'
miRNA:   3'- gCUG-GACuGCUUGUG-----GCgCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 73738 0.67 0.866105
Target:  5'- cCGACCUGuACGAcgcuaACAaCGUGCGC-ACg -3'
miRNA:   3'- -GCUGGAC-UGCU-----UGUgGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 74008 0.69 0.771946
Target:  5'- gGACCgGuACGAgaGCACCGCgGCGC-ACa -3'
miRNA:   3'- gCUGGaC-UGCU--UGUGGCG-CGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 77203 0.67 0.842584
Target:  5'- -aACCgGGCGGcacuaGCACCGCGaCGCgGCUg -3'
miRNA:   3'- gcUGGaCUGCU-----UGUGGCGC-GCGaUGA- -5'
6732 5' -55.7 NC_001875.2 + 77960 0.72 0.601002
Target:  5'- aCGACUugugguuuuUGAgGAACGCCGUGUGCUcaGCg -3'
miRNA:   3'- -GCUGG---------ACUgCUUGUGGCGCGCGA--UGa -5'
6732 5' -55.7 NC_001875.2 + 80293 0.71 0.652404
Target:  5'- uCGcACUUGACGAGCGCCGUcgccaGCGCg--- -3'
miRNA:   3'- -GC-UGGACUGCUUGUGGCG-----CGCGauga -5'
6732 5' -55.7 NC_001875.2 + 81510 0.67 0.858469
Target:  5'- gCGGCC-GGCGcgugcgcgcGGCACCaGCGCGCcGCg -3'
miRNA:   3'- -GCUGGaCUGC---------UUGUGG-CGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 83245 0.67 0.842584
Target:  5'- aCGAUUUGAgCGAAUugCGCGaccuggGCUGCg -3'
miRNA:   3'- -GCUGGACU-GCUUGugGCGCg-----CGAUGa -5'
6732 5' -55.7 NC_001875.2 + 83410 0.66 0.900987
Target:  5'- -cGCCaUGGCGccgcaaaACUGCGCGCUGCc -3'
miRNA:   3'- gcUGG-ACUGCuug----UGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 85206 0.66 0.900987
Target:  5'- uGAgCcGACGGGcCGCCGCGCGgUAg- -3'
miRNA:   3'- gCUgGaCUGCUU-GUGGCGCGCgAUga -5'
6732 5' -55.7 NC_001875.2 + 85435 0.7 0.719436
Target:  5'- gGACgUGuccacauccacguCGGACACCGUGuCGCUGCa -3'
miRNA:   3'- gCUGgACu------------GCUUGUGGCGC-GCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 88414 0.66 0.905413
Target:  5'- uCG-UCUGACGAguacggcggcagcgGCGgCGCGCGCcGCUu -3'
miRNA:   3'- -GCuGGACUGCU--------------UGUgGCGCGCGaUGA- -5'
6732 5' -55.7 NC_001875.2 + 90021 0.68 0.79054
Target:  5'- cCGACCUcaaGAGCucGCCGCGCGCcauguUGCa -3'
miRNA:   3'- -GCUGGAcugCUUG--UGGCGCGCG-----AUGa -5'
6732 5' -55.7 NC_001875.2 + 90354 0.68 0.816457
Target:  5'- cCGACCggccGGCGcAgaccacacaagacACGCCGCGCGCgccGCa -3'
miRNA:   3'- -GCUGGa---CUGC-U-------------UGUGGCGCGCGa--UGa -5'
6732 5' -55.7 NC_001875.2 + 93669 0.66 0.907274
Target:  5'- aCGACCUGcguCGGGCGCU-CGCGUUcACg -3'
miRNA:   3'- -GCUGGACu--GCUUGUGGcGCGCGA-UGa -5'
6732 5' -55.7 NC_001875.2 + 95567 0.71 0.652404
Target:  5'- aGGCCUuaccuuuGCG-ACGCCgGCGCGCUGCg -3'
miRNA:   3'- gCUGGAc------UGCuUGUGG-CGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 95595 0.68 0.825926
Target:  5'- gGACCUGGUGGACGacaCGgGCGCcGCg -3'
miRNA:   3'- gCUGGACUGCUUGUg--GCgCGCGaUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.