miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 83245 0.67 0.842584
Target:  5'- aCGAUUUGAgCGAAUugCGCGaccuggGCUGCg -3'
miRNA:   3'- -GCUGGACU-GCUUGugGCGCg-----CGAUGa -5'
6732 5' -55.7 NC_001875.2 + 81510 0.67 0.858469
Target:  5'- gCGGCC-GGCGcgugcgcgcGGCACCaGCGCGCcGCg -3'
miRNA:   3'- -GCUGGaCUGC---------UUGUGG-CGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 80293 0.71 0.652404
Target:  5'- uCGcACUUGACGAGCGCCGUcgccaGCGCg--- -3'
miRNA:   3'- -GC-UGGACUGCUUGUGGCG-----CGCGauga -5'
6732 5' -55.7 NC_001875.2 + 77960 0.72 0.601002
Target:  5'- aCGACUugugguuuuUGAgGAACGCCGUGUGCUcaGCg -3'
miRNA:   3'- -GCUGG---------ACUgCUUGUGGCGCGCGA--UGa -5'
6732 5' -55.7 NC_001875.2 + 77203 0.67 0.842584
Target:  5'- -aACCgGGCGGcacuaGCACCGCGaCGCgGCUg -3'
miRNA:   3'- gcUGGaCUGCU-----UGUGGCGC-GCGaUGA- -5'
6732 5' -55.7 NC_001875.2 + 74008 0.69 0.771946
Target:  5'- gGACCgGuACGAgaGCACCGCgGCGC-ACa -3'
miRNA:   3'- gCUGGaC-UGCU--UGUGGCG-CGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 73738 0.67 0.866105
Target:  5'- cCGACCUGuACGAcgcuaACAaCGUGCGC-ACg -3'
miRNA:   3'- -GCUGGAC-UGCU-----UGUgGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 72557 0.66 0.900987
Target:  5'- gGGCgCUG-CGGGCGCgggcgCGgGCGCUGCg -3'
miRNA:   3'- gCUG-GACuGCUUGUG-----GCgCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 72375 0.74 0.481507
Target:  5'- uGGCggaUUGGCGGACGCCGCGuCGCUGg- -3'
miRNA:   3'- gCUG---GACUGCUUGUGGCGC-GCGAUga -5'
6732 5' -55.7 NC_001875.2 + 71918 0.7 0.733321
Target:  5'- gCGugCgcgucGGCGAGCgccuugACCGCGCGCUccGCg -3'
miRNA:   3'- -GCugGa----CUGCUUG------UGGCGCGCGA--UGa -5'
6732 5' -55.7 NC_001875.2 + 71604 0.67 0.858469
Target:  5'- aGGCgUGGCGGACAUCaaGCGCgaGCUc -3'
miRNA:   3'- gCUGgACUGCUUGUGGcgCGCGa-UGA- -5'
6732 5' -55.7 NC_001875.2 + 70621 0.66 0.911533
Target:  5'- uGGCCUGccccgaacauuuguACGAcgGCGCCGCGUuuGCgUGCa -3'
miRNA:   3'- gCUGGAC--------------UGCU--UGUGGCGCG--CG-AUGa -5'
6732 5' -55.7 NC_001875.2 + 70539 0.68 0.817326
Target:  5'- uCGACCUcGAC-AGCGgCGCGCaauuGCUGCa -3'
miRNA:   3'- -GCUGGA-CUGcUUGUgGCGCG----CGAUGa -5'
6732 5' -55.7 NC_001875.2 + 68840 0.66 0.880021
Target:  5'- -uGCCUGGCGGacgggucGCACgCGUGCGCg--- -3'
miRNA:   3'- gcUGGACUGCU-------UGUG-GCGCGCGauga -5'
6732 5' -55.7 NC_001875.2 + 67127 0.68 0.825926
Target:  5'- cCGcCUUGGCcAGCGCCGUGuUGCUGCg -3'
miRNA:   3'- -GCuGGACUGcUUGUGGCGC-GCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 66236 0.73 0.51931
Target:  5'- gCGACCUGagccggcggcuggGCGAGCA-CGCGCGCgGCg -3'
miRNA:   3'- -GCUGGAC-------------UGCUUGUgGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 66036 0.72 0.610239
Target:  5'- -cGCUUGGCGccgcgcaGGCACCGCGCGCcgACg -3'
miRNA:   3'- gcUGGACUGC-------UUGUGGCGCGCGa-UGa -5'
6732 5' -55.7 NC_001875.2 + 63856 0.77 0.324695
Target:  5'- gCGACCgacaaaccgcaucGGCGAACGCUGCGCGCcGCg -3'
miRNA:   3'- -GCUGGa------------CUGCUUGUGGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 61583 0.68 0.808556
Target:  5'- cCGACgagGugGAGguagcgcccgauCACCGCGCGCUGg- -3'
miRNA:   3'- -GCUGga-CugCUU------------GUGGCGCGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 61540 0.7 0.723419
Target:  5'- gCGGCCaucaUGugGGACACgGUGCGUUGg- -3'
miRNA:   3'- -GCUGG----ACugCUUGUGgCGCGCGAUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.