miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 60237 0.69 0.762456
Target:  5'- -aACaaaUGGCGAGCACgaGCGCGCUAg- -3'
miRNA:   3'- gcUGg--ACUGCUUGUGg-CGCGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 58621 0.68 0.808556
Target:  5'- -aGCCUGACGGcCAgUGCugagGCGCUGCa -3'
miRNA:   3'- gcUGGACUGCUuGUgGCG----CGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 57504 0.68 0.799624
Target:  5'- aCGuACUUG-CGGuuuCGCCGCGCGCaGCg -3'
miRNA:   3'- -GC-UGGACuGCUu--GUGGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 57400 0.67 0.850626
Target:  5'- gGACCccuccacgcUGACGAccaACAUCGCGCccgugauggcguGCUACg -3'
miRNA:   3'- gCUGG---------ACUGCU---UGUGGCGCG------------CGAUGa -5'
6732 5' -55.7 NC_001875.2 + 56455 0.71 0.621546
Target:  5'- aGGCCggUGGCGGGguCCGCGCGCg--- -3'
miRNA:   3'- gCUGG--ACUGCUUguGGCGCGCGauga -5'
6732 5' -55.7 NC_001875.2 + 53874 0.66 0.880732
Target:  5'- uCGGCCUGuuggucguGCGGcCGCCGCgGCGCa--- -3'
miRNA:   3'- -GCUGGAC--------UGCUuGUGGCG-CGCGauga -5'
6732 5' -55.7 NC_001875.2 + 52730 0.69 0.771003
Target:  5'- aCGAUC-GGCGGAuCGCCagcauuuGCGCGCUGCc -3'
miRNA:   3'- -GCUGGaCUGCUU-GUGG-------CGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 51905 0.67 0.866105
Target:  5'- aCGGCgUGaACGAggugAUGCCGC-CGCUGCa -3'
miRNA:   3'- -GCUGgAC-UGCU----UGUGGCGcGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 51542 0.73 0.560248
Target:  5'- -aGCgCUGGCGAacACGCCGaCGCGCUugUc -3'
miRNA:   3'- gcUG-GACUGCU--UGUGGC-GCGCGAugA- -5'
6732 5' -55.7 NC_001875.2 + 50147 0.66 0.907274
Target:  5'- -aACCgcGACaAGCGCCGCGUcaGCUACa -3'
miRNA:   3'- gcUGGa-CUGcUUGUGGCGCG--CGAUGa -5'
6732 5' -55.7 NC_001875.2 + 49949 0.68 0.799624
Target:  5'- ---gCUGGucgucgGAGCugCGCGCGCUGCUg -3'
miRNA:   3'- gcugGACUg-----CUUGugGCGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 48814 0.66 0.887713
Target:  5'- aGugCUaACauGCuCCGCGCGCUACg -3'
miRNA:   3'- gCugGAcUGcuUGuGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 48082 0.66 0.894466
Target:  5'- -cGCCUGuuGcAGCACguaCGCGUGCUGCg -3'
miRNA:   3'- gcUGGACugC-UUGUG---GCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 47676 0.68 0.817326
Target:  5'- gCGGCC--GCGGcGCGCCGCGCGUUuCUc -3'
miRNA:   3'- -GCUGGacUGCU-UGUGGCGCGCGAuGA- -5'
6732 5' -55.7 NC_001875.2 + 45391 0.66 0.900987
Target:  5'- aCGACaaGGCGAcGCGCCGCcuguucGCGCgcgACg -3'
miRNA:   3'- -GCUGgaCUGCU-UGUGGCG------CGCGa--UGa -5'
6732 5' -55.7 NC_001875.2 + 44763 0.66 0.887713
Target:  5'- uCGugCUGguuggggaACGAGCGCCGC-UGCuUGCUa -3'
miRNA:   3'- -GCugGAC--------UGCUUGUGGCGcGCG-AUGA- -5'
6732 5' -55.7 NC_001875.2 + 44615 0.71 0.672907
Target:  5'- aCGACUUGGCGcacuGCGCCGacgGCGCcuUGCUg -3'
miRNA:   3'- -GCUGGACUGCu---UGUGGCg--CGCG--AUGA- -5'
6732 5' -55.7 NC_001875.2 + 44529 0.69 0.743134
Target:  5'- uCGGCCaccaUGGCGuaaucgacguugGGCAgCCGCGCGUUGCg -3'
miRNA:   3'- -GCUGG----ACUGC------------UUGU-GGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 44001 0.7 0.723419
Target:  5'- -aGCCcGACGGGCGCCGUGCccaGCgUGCUg -3'
miRNA:   3'- gcUGGaCUGCUUGUGGCGCG---CG-AUGA- -5'
6732 5' -55.7 NC_001875.2 + 43578 0.66 0.887713
Target:  5'- uGGCCgagGACGGcACGCaCGCGCaaauCUGCUu -3'
miRNA:   3'- gCUGGa--CUGCU-UGUG-GCGCGc---GAUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.