miRNA display CGI


Results 81 - 100 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 43110 0.67 0.842584
Target:  5'- ---gUUGGCGcGCugCGCGgGCUGCUg -3'
miRNA:   3'- gcugGACUGCuUGugGCGCgCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 43012 0.73 0.560248
Target:  5'- gGACCUGcgccuGCGGcGCGCCggauuuGCGCGCUACg -3'
miRNA:   3'- gCUGGAC-----UGCU-UGUGG------CGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 43011 0.7 0.703388
Target:  5'- uGGCCUccauuGCGAGUGCCGCGCGCcGCg -3'
miRNA:   3'- gCUGGAc----UGCUUGUGGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 42869 0.66 0.906656
Target:  5'- aCGACCgGgugcgccuugcguACGAA-ACCGCGCGCcGCg -3'
miRNA:   3'- -GCUGGaC-------------UGCUUgUGGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 42716 0.67 0.842584
Target:  5'- cCGACCUGGCGcg-GCUGgGCGCgACc -3'
miRNA:   3'- -GCUGGACUGCuugUGGCgCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 42595 0.67 0.850626
Target:  5'- gCGGCCgcUGACGcAgGCguuUGCGUGCUGCUa -3'
miRNA:   3'- -GCUGG--ACUGCuUgUG---GCGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 42364 0.67 0.873528
Target:  5'- aGcACCacGCGugcCGCCGCGCGCUAUUu -3'
miRNA:   3'- gC-UGGacUGCuu-GUGGCGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 41237 0.66 0.907274
Target:  5'- aCGGCCU--CGGcCGUCGCGUGCUACa -3'
miRNA:   3'- -GCUGGAcuGCUuGUGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 40684 0.67 0.842584
Target:  5'- gGACCaUGACGcGGCgcauuuggaaccGCCGCGCGC-GCg -3'
miRNA:   3'- gCUGG-ACUGC-UUG------------UGGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 40104 0.66 0.907274
Target:  5'- gCGGCggGuCGGGCaACCGCGCGCa--- -3'
miRNA:   3'- -GCUGgaCuGCUUG-UGGCGCGCGauga -5'
6732 5' -55.7 NC_001875.2 + 39270 0.67 0.849831
Target:  5'- gCGACgCggGGCGGcuucugcccgccgACACCaaguGCGCGCUGCa -3'
miRNA:   3'- -GCUG-Ga-CUGCU-------------UGUGG----CGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 38650 0.67 0.850626
Target:  5'- cCGACUcGcCG--UACCGCGUGCUGCUc -3'
miRNA:   3'- -GCUGGaCuGCuuGUGGCGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 38457 0.7 0.737257
Target:  5'- cCGGCCUugucGGCGcuCGCCaccgcgucgucguacGCGCGCUGCg -3'
miRNA:   3'- -GCUGGA----CUGCuuGUGG---------------CGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 37895 0.68 0.80767
Target:  5'- gCGGCuugCUGGCGcggcacuGGCACCGCGCGUguuggACg -3'
miRNA:   3'- -GCUG---GACUGC-------UUGUGGCGCGCGa----UGa -5'
6732 5' -55.7 NC_001875.2 + 37356 0.71 0.621546
Target:  5'- gCGGCCgcgcgcucguGCGAACGCgCGCGCcGCUGCa -3'
miRNA:   3'- -GCUGGac--------UGCUUGUG-GCGCG-CGAUGa -5'
6732 5' -55.7 NC_001875.2 + 37211 0.68 0.799624
Target:  5'- -aGCCUGGCGcAGCggugcagcaaGCCGCugccGCGCUACa -3'
miRNA:   3'- gcUGGACUGC-UUG----------UGGCG----CGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 35807 0.66 0.880732
Target:  5'- -uGCCUGAUGGccGCGCaCuuGCGCUGCg -3'
miRNA:   3'- gcUGGACUGCU--UGUG-GcgCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 35226 0.78 0.312992
Target:  5'- cCGACCUGgccGCGAuuguGCACaaaaagCGCGCGCUGCUg -3'
miRNA:   3'- -GCUGGAC---UGCU----UGUG------GCGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 34517 0.66 0.887713
Target:  5'- aCGGCagcaaCUG-CGucucuuGCGCCGCGCGCuUGCUc -3'
miRNA:   3'- -GCUG-----GACuGCu-----UGUGGCGCGCG-AUGA- -5'
6732 5' -55.7 NC_001875.2 + 33525 0.7 0.733321
Target:  5'- aCGGCCUGcuucuuuuGCGAcUGCCGCGUGCgugauugGCUg -3'
miRNA:   3'- -GCUGGAC--------UGCUuGUGGCGCGCGa------UGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.