miRNA display CGI


Results 101 - 120 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 33463 0.73 0.539148
Target:  5'- cCGGCCagUGGuCGAaaguggcGCGCCGCGCGCUGg- -3'
miRNA:   3'- -GCUGG--ACU-GCU-------UGUGGCGCGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 32787 0.68 0.79054
Target:  5'- gCGGCgUgGGCGGGCGCCGCGC-CgGCa -3'
miRNA:   3'- -GCUGgA-CUGCUUGUGGCGCGcGaUGa -5'
6732 5' -55.7 NC_001875.2 + 32226 0.69 0.771946
Target:  5'- -aGCCUGcACGAGCGCCauuuugcgguacGCGCGCgcacGCUc -3'
miRNA:   3'- gcUGGAC-UGCUUGUGG------------CGCGCGa---UGA- -5'
6732 5' -55.7 NC_001875.2 + 32125 0.68 0.817326
Target:  5'- gCGcACUUG-CGAGCGCCGCauaGCGCUcaACg -3'
miRNA:   3'- -GC-UGGACuGCUUGUGGCG---CGCGA--UGa -5'
6732 5' -55.7 NC_001875.2 + 31915 0.68 0.79054
Target:  5'- uGGCC--GCGcuGCACCGCGCGCggGCc -3'
miRNA:   3'- gCUGGacUGCu-UGUGGCGCGCGa-UGa -5'
6732 5' -55.7 NC_001875.2 + 30956 0.72 0.58055
Target:  5'- -cGCCaUGGCGccCACgCGCGCGCUGCg -3'
miRNA:   3'- gcUGG-ACUGCuuGUG-GCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 29572 0.71 0.662668
Target:  5'- gGGCCgcggcGACGAgguGCGCUGCGCGUuuUGCa -3'
miRNA:   3'- gCUGGa----CUGCU---UGUGGCGCGCG--AUGa -5'
6732 5' -55.7 NC_001875.2 + 26241 0.66 0.907274
Target:  5'- uGAUUUGAgaaaCGuGACGCC-CGCGCUGCa -3'
miRNA:   3'- gCUGGACU----GC-UUGUGGcGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 23932 0.7 0.723419
Target:  5'- gCGACCUGggcaACGuGCGCUcuGCGgGCUGCa -3'
miRNA:   3'- -GCUGGAC----UGCuUGUGG--CGCgCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 23796 0.66 0.894466
Target:  5'- gGGCCUcGGCGAGCACC-CGCuCaGCa -3'
miRNA:   3'- gCUGGA-CUGCUUGUGGcGCGcGaUGa -5'
6732 5' -55.7 NC_001875.2 + 21667 0.68 0.817326
Target:  5'- aCGACaaGGCGGAgGCCaaGCGCGC-ACUc -3'
miRNA:   3'- -GCUGgaCUGCUUgUGG--CGCGCGaUGA- -5'
6732 5' -55.7 NC_001875.2 + 17485 0.73 0.539148
Target:  5'- uGGCCagcaaguUGGCGGACGCCGCGuCGUUuGCUa -3'
miRNA:   3'- gCUGG-------ACUGCUUGUGGCGC-GCGA-UGA- -5'
6732 5' -55.7 NC_001875.2 + 17091 0.68 0.808556
Target:  5'- aGGCCgGGCaa--GCCGCGCGCcACUg -3'
miRNA:   3'- gCUGGaCUGcuugUGGCGCGCGaUGA- -5'
6732 5' -55.7 NC_001875.2 + 16540 0.68 0.833514
Target:  5'- gCGugCaauacaaUGACGuGCGCgGCGCGCUAa- -3'
miRNA:   3'- -GCugG-------ACUGCuUGUGgCGCGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 15889 0.66 0.894466
Target:  5'- aCGugCauUGcCGAAgACC-CGCGCUACUu -3'
miRNA:   3'- -GCugG--ACuGCUUgUGGcGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 10373 0.75 0.444176
Target:  5'- aCGGCCUGGCcgaaaacuuuGAACGCCGCcGCGCcgugGCg -3'
miRNA:   3'- -GCUGGACUG----------CUUGUGGCG-CGCGa---UGa -5'
6732 5' -55.7 NC_001875.2 + 8504 0.67 0.850626
Target:  5'- cCGuCCgUGugG-GCGCCGCGCaCUGCa -3'
miRNA:   3'- -GCuGG-ACugCuUGUGGCGCGcGAUGa -5'
6732 5' -55.7 NC_001875.2 + 7635 0.7 0.693276
Target:  5'- cCGACCUG-CGcacacACGCCGaCGCGCU-CUa -3'
miRNA:   3'- -GCUGGACuGCu----UGUGGC-GCGCGAuGA- -5'
6732 5' -55.7 NC_001875.2 + 7519 0.68 0.817326
Target:  5'- cCGAUCcGGCGGGCACUGCaccGCagGCUACa -3'
miRNA:   3'- -GCUGGaCUGCUUGUGGCG---CG--CGAUGa -5'
6732 5' -55.7 NC_001875.2 + 7424 0.67 0.873528
Target:  5'- gGGCCcaacGACGAggGCaACUGCGCGCcgGCg -3'
miRNA:   3'- gCUGGa---CUGCU--UG-UGGCGCGCGa-UGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.