Results 61 - 80 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6732 | 5' | -55.7 | NC_001875.2 | + | 37895 | 0.68 | 0.80767 |
Target: 5'- gCGGCuugCUGGCGcggcacuGGCACCGCGCGUguuggACg -3' miRNA: 3'- -GCUG---GACUGC-------UUGUGGCGCGCGa----UGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 37211 | 0.68 | 0.799624 |
Target: 5'- -aGCCUGGCGcAGCggugcagcaaGCCGCugccGCGCUACa -3' miRNA: 3'- gcUGGACUGC-UUG----------UGGCG----CGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 49949 | 0.68 | 0.799624 |
Target: 5'- ---gCUGGucgucgGAGCugCGCGCGCUGCUg -3' miRNA: 3'- gcugGACUg-----CUUGugGCGCGCGAUGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 126324 | 0.68 | 0.79054 |
Target: 5'- gCGGCC-GGCGuaaACUGCGCGCgUGCg -3' miRNA: 3'- -GCUGGaCUGCuugUGGCGCGCG-AUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 90021 | 0.68 | 0.79054 |
Target: 5'- cCGACCUcaaGAGCucGCCGCGCGCcauguUGCa -3' miRNA: 3'- -GCUGGAcugCUUG--UGGCGCGCG-----AUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 32787 | 0.68 | 0.79054 |
Target: 5'- gCGGCgUgGGCGGGCGCCGCGC-CgGCa -3' miRNA: 3'- -GCUGgA-CUGCUUGUGGCGCGcGaUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 44001 | 0.7 | 0.723419 |
Target: 5'- -aGCCcGACGGGCGCCGUGCccaGCgUGCUg -3' miRNA: 3'- gcUGGaCUGCUUGUGGCGCG---CG-AUGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 71918 | 0.7 | 0.733321 |
Target: 5'- gCGugCgcgucGGCGAGCgccuugACCGCGCGCUccGCg -3' miRNA: 3'- -GCugGa----CUGCUUG------UGGCGCGCGA--UGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 44529 | 0.69 | 0.743134 |
Target: 5'- uCGGCCaccaUGGCGuaaucgacguugGGCAgCCGCGCGUUGCg -3' miRNA: 3'- -GCUGG----ACUGC------------UUGU-GGCGCGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 60237 | 0.69 | 0.762456 |
Target: 5'- -aACaaaUGGCGAGCACgaGCGCGCUAg- -3' miRNA: 3'- gcUGg--ACUGCUUGUGg-CGCGCGAUga -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 52730 | 0.69 | 0.771003 |
Target: 5'- aCGAUC-GGCGGAuCGCCagcauuuGCGCGCUGCc -3' miRNA: 3'- -GCUGGaCUGCUU-GUGG-------CGCGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 74008 | 0.69 | 0.771946 |
Target: 5'- gGACCgGuACGAgaGCACCGCgGCGC-ACa -3' miRNA: 3'- gCUGGaC-UGCU--UGUGGCG-CGCGaUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 31915 | 0.68 | 0.79054 |
Target: 5'- uGGCC--GCGcuGCACCGCGCGCggGCc -3' miRNA: 3'- gCUGGacUGCu-UGUGGCGCGCGa-UGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 66236 | 0.73 | 0.51931 |
Target: 5'- gCGACCUGagccggcggcuggGCGAGCA-CGCGCGCgGCg -3' miRNA: 3'- -GCUGGAC-------------UGCUUGUgGCGCGCGaUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 72375 | 0.74 | 0.481507 |
Target: 5'- uGGCggaUUGGCGGACGCCGCGuCGCUGg- -3' miRNA: 3'- gCUG---GACUGCUUGUGGCGC-GCGAUga -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 101070 | 0.76 | 0.374718 |
Target: 5'- gCGAgCgcGGCGAGCGucuCCGCGCGCUGCg -3' miRNA: 3'- -GCUgGa-CUGCUUGU---GGCGCGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 99279 | 0.77 | 0.3352 |
Target: 5'- gCGACCUGGgGAAUugCGaCGCGUUGCc -3' miRNA: 3'- -GCUGGACUgCUUGugGC-GCGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 63856 | 0.77 | 0.324695 |
Target: 5'- gCGACCgacaaaccgcaucGGCGAACGCUGCGCGCcGCg -3' miRNA: 3'- -GCUGGa------------CUGCUUGUGGCGCGCGaUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 125073 | 0.82 | 0.179051 |
Target: 5'- uCGGCCgagGGCGuGgACCGCGCGCUACa -3' miRNA: 3'- -GCUGGa--CUGCuUgUGGCGCGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 122410 | 0.66 | 0.913322 |
Target: 5'- uGGCCUGcgguuaGCGGugGgCGCGUGCaACg -3' miRNA: 3'- gCUGGAC------UGCUugUgGCGCGCGaUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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