Results 121 - 131 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6732 | 5' | -55.7 | NC_001875.2 | + | 70539 | 0.68 | 0.817326 |
Target: 5'- uCGACCUcGAC-AGCGgCGCGCaauuGCUGCa -3' miRNA: 3'- -GCUGGA-CUGcUUGUgGCGCG----CGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 618 | 0.68 | 0.816457 |
Target: 5'- aCGGCCUGugcaagcGCGAACACuCGC-CGgUGCa -3' miRNA: 3'- -GCUGGAC-------UGCUUGUG-GCGcGCgAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 57504 | 0.68 | 0.799624 |
Target: 5'- aCGuACUUG-CGGuuuCGCCGCGCGCaGCg -3' miRNA: 3'- -GC-UGGACuGCUu--GUGGCGCGCGaUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 32226 | 0.69 | 0.771946 |
Target: 5'- -aGCCUGcACGAGCGCCauuuugcgguacGCGCGCgcacGCUc -3' miRNA: 3'- gcUGGAC-UGCUUGUGG------------CGCGCGa---UGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 110310 | 0.69 | 0.762456 |
Target: 5'- -cGCCcGACGAGCGCgaCGCGgUGCUGCg -3' miRNA: 3'- gcUGGaCUGCUUGUG--GCGC-GCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 130552 | 0.69 | 0.762456 |
Target: 5'- gCGAcCCUGcuuuucggguGCGAACGCucucgaaaggCGCGUGCUACUu -3' miRNA: 3'- -GCU-GGAC----------UGCUUGUG----------GCGCGCGAUGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 108420 | 0.69 | 0.752849 |
Target: 5'- aCGAgC--GCGGGCACCGCGUGCUugGCc -3' miRNA: 3'- -GCUgGacUGCUUGUGGCGCGCGA--UGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 6780 | 0.69 | 0.743134 |
Target: 5'- cCGAUCgcugGcACGAguACACCGCGUGCgGCg -3' miRNA: 3'- -GCUGGa---C-UGCU--UGUGGCGCGCGaUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 38457 | 0.7 | 0.737257 |
Target: 5'- cCGGCCUugucGGCGcuCGCCaccgcgucgucguacGCGCGCUGCg -3' miRNA: 3'- -GCUGGA----CUGCuuGUGG---------------CGCGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 33525 | 0.7 | 0.733321 |
Target: 5'- aCGGCCUGcuucuuuuGCGAcUGCCGCGUGCgugauugGCUg -3' miRNA: 3'- -GCUGGAC--------UGCUuGUGGCGCGCGa------UGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 6612 | 1.08 | 0.003227 |
Target: 5'- uCGACCUGACGAACACCGCGCGCUACUa -3' miRNA: 3'- -GCUGGACUGCUUGUGGCGCGCGAUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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