miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 43110 0.67 0.842584
Target:  5'- ---gUUGGCGcGCugCGCGgGCUGCUg -3'
miRNA:   3'- gcugGACUGCuUGugGCGCgCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 125073 0.82 0.179051
Target:  5'- uCGGCCgagGGCGuGgACCGCGCGCUACa -3'
miRNA:   3'- -GCUGGa--CUGCuUgUGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 6612 1.08 0.003227
Target:  5'- uCGACCUGACGAACACCGCGCGCUACUa -3'
miRNA:   3'- -GCUGGACUGCUUGUGGCGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 45391 0.66 0.900987
Target:  5'- aCGACaaGGCGAcGCGCCGCcuguucGCGCgcgACg -3'
miRNA:   3'- -GCUGgaCUGCU-UGUGGCG------CGCGa--UGa -5'
6732 5' -55.7 NC_001875.2 + 130465 0.66 0.913322
Target:  5'- gGGCgCUcuCGAACGgCGCGUGCUAUUu -3'
miRNA:   3'- gCUG-GAcuGCUUGUgGCGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 101070 0.76 0.374718
Target:  5'- gCGAgCgcGGCGAGCGucuCCGCGCGCUGCg -3'
miRNA:   3'- -GCUgGa-CUGCUUGU---GGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 88414 0.66 0.905413
Target:  5'- uCG-UCUGACGAguacggcggcagcgGCGgCGCGCGCcGCUu -3'
miRNA:   3'- -GCuGGACUGCU--------------UGUgGCGCGCGaUGA- -5'
6732 5' -55.7 NC_001875.2 + 23796 0.66 0.894466
Target:  5'- gGGCCUcGGCGAGCACC-CGCuCaGCa -3'
miRNA:   3'- gCUGGA-CUGCUUGUGGcGCGcGaUGa -5'
6732 5' -55.7 NC_001875.2 + 35807 0.66 0.880732
Target:  5'- -uGCCUGAUGGccGCGCaCuuGCGCUGCg -3'
miRNA:   3'- gcUGGACUGCU--UGUG-GcgCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 113733 0.67 0.858469
Target:  5'- cCGugCUGGCccaauggcGCGCCGUGCGCgaccGCg -3'
miRNA:   3'- -GCugGACUGcu------UGUGGCGCGCGa---UGa -5'
6732 5' -55.7 NC_001875.2 + 57400 0.67 0.850626
Target:  5'- gGACCccuccacgcUGACGAccaACAUCGCGCccgugauggcguGCUACg -3'
miRNA:   3'- gCUGG---------ACUGCU---UGUGGCGCG------------CGAUGa -5'
6732 5' -55.7 NC_001875.2 + 102475 0.68 0.825926
Target:  5'- aCGAgCUGACGAGCGCgauuaguuCGgGCUACg -3'
miRNA:   3'- -GCUgGACUGCUUGUGgc------GCgCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 7519 0.68 0.817326
Target:  5'- cCGAUCcGGCGGGCACUGCaccGCagGCUACa -3'
miRNA:   3'- -GCUGGaCUGCUUGUGGCG---CG--CGAUGa -5'
6732 5' -55.7 NC_001875.2 + 32226 0.69 0.771946
Target:  5'- -aGCCUGcACGAGCGCCauuuugcgguacGCGCGCgcacGCUc -3'
miRNA:   3'- gcUGGAC-UGCUUGUGG------------CGCGCGa---UGA- -5'
6732 5' -55.7 NC_001875.2 + 108420 0.69 0.752849
Target:  5'- aCGAgC--GCGGGCACCGCGUGCUugGCc -3'
miRNA:   3'- -GCUgGacUGCUUGUGGCGCGCGA--UGa -5'
6732 5' -55.7 NC_001875.2 + 110662 0.7 0.703388
Target:  5'- gGGCCcgccuuguUGACGAgcaGCGCCGUGUGCUugACg -3'
miRNA:   3'- gCUGG--------ACUGCU---UGUGGCGCGCGA--UGa -5'
6732 5' -55.7 NC_001875.2 + 95567 0.71 0.652404
Target:  5'- aGGCCUuaccuuuGCG-ACGCCgGCGCGCUGCg -3'
miRNA:   3'- gCUGGAc------UGCuUGUGG-CGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 98309 0.73 0.550169
Target:  5'- aCGGCCcGACGuGCGCCGCcCGCUGa- -3'
miRNA:   3'- -GCUGGaCUGCuUGUGGCGcGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 37211 0.68 0.799624
Target:  5'- -aGCCUGGCGcAGCggugcagcaaGCCGCugccGCGCUACa -3'
miRNA:   3'- gcUGGACUGC-UUG----------UGGCG----CGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 44763 0.66 0.887713
Target:  5'- uCGugCUGguuggggaACGAGCGCCGC-UGCuUGCUa -3'
miRNA:   3'- -GCugGAC--------UGCUUGUGGCGcGCG-AUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.