miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 102754 0.71 0.662668
Target:  5'- gCGGCCUuugcACGAGCGCUGCaGCGCUucaaaACUg -3'
miRNA:   3'- -GCUGGAc---UGCUUGUGGCG-CGCGA-----UGA- -5'
6732 5' -55.7 NC_001875.2 + 48814 0.66 0.887713
Target:  5'- aGugCUaACauGCuCCGCGCGCUACg -3'
miRNA:   3'- gCugGAcUGcuUGuGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 37211 0.68 0.799624
Target:  5'- -aGCCUGGCGcAGCggugcagcaaGCCGCugccGCGCUACa -3'
miRNA:   3'- gcUGGACUGC-UUG----------UGGCG----CGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 66036 0.72 0.610239
Target:  5'- -cGCUUGGCGccgcgcaGGCACCGCGCGCcgACg -3'
miRNA:   3'- gcUGGACUGC-------UUGUGGCGCGCGa-UGa -5'
6732 5' -55.7 NC_001875.2 + 15889 0.66 0.894466
Target:  5'- aCGugCauUGcCGAAgACC-CGCGCUACUu -3'
miRNA:   3'- -GCugG--ACuGCUUgUGGcGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 126324 0.68 0.79054
Target:  5'- gCGGCC-GGCGuaaACUGCGCGCgUGCg -3'
miRNA:   3'- -GCUGGaCUGCuugUGGCGCGCG-AUGa -5'
6732 5' -55.7 NC_001875.2 + 32787 0.68 0.79054
Target:  5'- gCGGCgUgGGCGGGCGCCGCGC-CgGCa -3'
miRNA:   3'- -GCUGgA-CUGCUUGUGGCGCGcGaUGa -5'
6732 5' -55.7 NC_001875.2 + 31915 0.68 0.79054
Target:  5'- uGGCC--GCGcuGCACCGCGCGCggGCc -3'
miRNA:   3'- gCUGGacUGCu-UGUGGCGCGCGa-UGa -5'
6732 5' -55.7 NC_001875.2 + 90021 0.68 0.79054
Target:  5'- cCGACCUcaaGAGCucGCCGCGCGCcauguUGCa -3'
miRNA:   3'- -GCUGGAcugCUUG--UGGCGCGCG-----AUGa -5'
6732 5' -55.7 NC_001875.2 + 51905 0.67 0.866105
Target:  5'- aCGGCgUGaACGAggugAUGCCGC-CGCUGCa -3'
miRNA:   3'- -GCUGgAC-UGCU----UGUGGCGcGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 73738 0.67 0.866105
Target:  5'- cCGACCUGuACGAcgcuaACAaCGUGCGC-ACg -3'
miRNA:   3'- -GCUGGAC-UGCU-----UGUgGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 4459 0.67 0.873528
Target:  5'- uGGCCaGGCucuGAGCGCCGUccGCGCaUGCUu -3'
miRNA:   3'- gCUGGaCUG---CUUGUGGCG--CGCG-AUGA- -5'
6732 5' -55.7 NC_001875.2 + 7424 0.67 0.873528
Target:  5'- gGGCCcaacGACGAggGCaACUGCGCGCcgGCg -3'
miRNA:   3'- gCUGGa---CUGCU--UG-UGGCGCGCGa-UGa -5'
6732 5' -55.7 NC_001875.2 + 68840 0.66 0.880021
Target:  5'- -uGCCUGGCGGacgggucGCACgCGUGCGCg--- -3'
miRNA:   3'- gcUGGACUGCU-------UGUG-GCGCGCGauga -5'
6732 5' -55.7 NC_001875.2 + 53874 0.66 0.880732
Target:  5'- uCGGCCUGuuggucguGCGGcCGCCGCgGCGCa--- -3'
miRNA:   3'- -GCUGGAC--------UGCUuGUGGCG-CGCGauga -5'
6732 5' -55.7 NC_001875.2 + 128776 0.66 0.880732
Target:  5'- gCGACCccGGCGcgcCGCUGCGCGCcucuUACg -3'
miRNA:   3'- -GCUGGa-CUGCuu-GUGGCGCGCG----AUGa -5'
6732 5' -55.7 NC_001875.2 + 100617 0.66 0.88144
Target:  5'- gCGGCCgcuguuugccucgugGAUGAGCAgCGUGCGCg--- -3'
miRNA:   3'- -GCUGGa--------------CUGCUUGUgGCGCGCGauga -5'
6732 5' -55.7 NC_001875.2 + 107484 0.66 0.885642
Target:  5'- aCGACCacGACGGguaucuggagcugaACGCCGCGgcaCGCUugUu -3'
miRNA:   3'- -GCUGGa-CUGCU--------------UGUGGCGC---GCGAugA- -5'
6732 5' -55.7 NC_001875.2 + 44763 0.66 0.887713
Target:  5'- uCGugCUGguuggggaACGAGCGCCGC-UGCuUGCUa -3'
miRNA:   3'- -GCugGAC--------UGCUUGUGGCGcGCG-AUGA- -5'
6732 5' -55.7 NC_001875.2 + 6952 0.66 0.894466
Target:  5'- gCGugCgccGCGAcauCGCCacgGCGCGCUGCUu -3'
miRNA:   3'- -GCugGac-UGCUu--GUGG---CGCGCGAUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.