miRNA display CGI


Results 101 - 120 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 7424 0.67 0.873528
Target:  5'- gGGCCcaacGACGAggGCaACUGCGCGCcgGCg -3'
miRNA:   3'- gCUGGa---CUGCU--UG-UGGCGCGCGa-UGa -5'
6732 5' -55.7 NC_001875.2 + 4459 0.67 0.873528
Target:  5'- uGGCCaGGCucuGAGCGCCGUccGCGCaUGCUu -3'
miRNA:   3'- gCUGGaCUG---CUUGUGGCG--CGCG-AUGA- -5'
6732 5' -55.7 NC_001875.2 + 73738 0.67 0.866105
Target:  5'- cCGACCUGuACGAcgcuaACAaCGUGCGC-ACg -3'
miRNA:   3'- -GCUGGAC-UGCU-----UGUgGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 83410 0.66 0.900987
Target:  5'- -cGCCaUGGCGccgcaaaACUGCGCGCUGCc -3'
miRNA:   3'- gcUGG-ACUGCuug----UGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 85206 0.66 0.900987
Target:  5'- uGAgCcGACGGGcCGCCGCGCGgUAg- -3'
miRNA:   3'- gCUgGaCUGCUU-GUGGCGCGCgAUga -5'
6732 5' -55.7 NC_001875.2 + 7005 0.68 0.808556
Target:  5'- uCGACgUGGCGcgccaguugcugGACguaagcgaggugGCCGCGCGCUugUc -3'
miRNA:   3'- -GCUGgACUGC------------UUG------------UGGCGCGCGAugA- -5'
6732 5' -55.7 NC_001875.2 + 58621 0.68 0.808556
Target:  5'- -aGCCUGACGGcCAgUGCugagGCGCUGCa -3'
miRNA:   3'- gcUGGACUGCUuGUgGCG----CGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 61583 0.68 0.808556
Target:  5'- cCGACgagGugGAGguagcgcccgauCACCGCGCGCUGg- -3'
miRNA:   3'- -GCUGga-CugCUU------------GUGGCGCGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 90354 0.68 0.816457
Target:  5'- cCGACCggccGGCGcAgaccacacaagacACGCCGCGCGCgccGCa -3'
miRNA:   3'- -GCUGGa---CUGC-U-------------UGUGGCGCGCGa--UGa -5'
6732 5' -55.7 NC_001875.2 + 32125 0.68 0.817326
Target:  5'- gCGcACUUG-CGAGCGCCGCauaGCGCUcaACg -3'
miRNA:   3'- -GC-UGGACuGCUUGUGGCG---CGCGA--UGa -5'
6732 5' -55.7 NC_001875.2 + 47676 0.68 0.817326
Target:  5'- gCGGCC--GCGGcGCGCCGCGCGUUuCUc -3'
miRNA:   3'- -GCUGGacUGCU-UGUGGCGCGCGAuGA- -5'
6732 5' -55.7 NC_001875.2 + 21667 0.68 0.817326
Target:  5'- aCGACaaGGCGGAgGCCaaGCGCGC-ACUc -3'
miRNA:   3'- -GCUGgaCUGCUUgUGG--CGCGCGaUGA- -5'
6732 5' -55.7 NC_001875.2 + 117277 0.68 0.825926
Target:  5'- gCGGCCgaugcgcuucACGAugGCCGCGUGCgccaGCUc -3'
miRNA:   3'- -GCUGGac--------UGCUugUGGCGCGCGa---UGA- -5'
6732 5' -55.7 NC_001875.2 + 67127 0.68 0.825926
Target:  5'- cCGcCUUGGCcAGCGCCGUGuUGCUGCg -3'
miRNA:   3'- -GCuGGACUGcUUGUGGCGC-GCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 40684 0.67 0.842584
Target:  5'- gGACCaUGACGcGGCgcauuuggaaccGCCGCGCGC-GCg -3'
miRNA:   3'- gCUGG-ACUGC-UUG------------UGGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 16540 0.68 0.833514
Target:  5'- gCGugCaauacaaUGACGuGCGCgGCGCGCUAa- -3'
miRNA:   3'- -GCugG-------ACUGCuUGUGgCGCGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 95736 0.66 0.913322
Target:  5'- uGAgC-GGCGccgcCGCCGCGUGCUGCc -3'
miRNA:   3'- gCUgGaCUGCuu--GUGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 70621 0.66 0.911533
Target:  5'- uGGCCUGccccgaacauuuguACGAcgGCGCCGCGUuuGCgUGCa -3'
miRNA:   3'- gCUGGAC--------------UGCU--UGUGGCGCG--CG-AUGa -5'
6732 5' -55.7 NC_001875.2 + 41237 0.66 0.907274
Target:  5'- aCGGCCU--CGGcCGUCGCGUGCUACa -3'
miRNA:   3'- -GCUGGAcuGCUuGUGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 93669 0.66 0.907274
Target:  5'- aCGACCUGcguCGGGCGCU-CGCGUUcACg -3'
miRNA:   3'- -GCUGGACu--GCUUGUGGcGCGCGA-UGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.