miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6733 3' -58.1 NC_001875.2 + 111699 0.66 0.776781
Target:  5'- gGUAGCGuu-CCAGcgcuggaaauucccGCCGACGuGCGCg -3'
miRNA:   3'- gCGUCGCcuuGGUC--------------CGGCUGUuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 102965 0.66 0.770269
Target:  5'- uGCGGCGGcgaCGGGCUaaACGAcGCGCu -3'
miRNA:   3'- gCGUCGCCuugGUCCGGc-UGUU-CGCG- -5'
6733 3' -58.1 NC_001875.2 + 99391 0.66 0.770269
Target:  5'- cCGCaccGGCGGcGCCagcGGGUCG-CGcAGCGCa -3'
miRNA:   3'- -GCG---UCGCCuUGG---UCCGGCuGU-UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 30824 0.66 0.770269
Target:  5'- gCGCGGCGGcaaaCAGGuuGuu--GCGCa -3'
miRNA:   3'- -GCGUCGCCuug-GUCCggCuguuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 45881 0.66 0.770269
Target:  5'- gGCuucGCGuGGACguGGCCaucGGCAGuGCGCg -3'
miRNA:   3'- gCGu--CGC-CUUGguCCGG---CUGUU-CGCG- -5'
6733 3' -58.1 NC_001875.2 + 50108 0.66 0.770269
Target:  5'- aGCAGCGcGcgcagcuccgacGACCA-GCUGAUuAGCGCg -3'
miRNA:   3'- gCGUCGC-C------------UUGGUcCGGCUGuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 6458 0.66 0.770269
Target:  5'- aGCGcGCGGuguucgUCAGGUCGAUuacGGCGCc -3'
miRNA:   3'- gCGU-CGCCuu----GGUCCGGCUGu--UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 124879 0.67 0.760864
Target:  5'- gGCGGCGaAAC--GGCCGACGcGUGCc -3'
miRNA:   3'- gCGUCGCcUUGguCCGGCUGUuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 18653 0.67 0.760864
Target:  5'- uGCGGC-GggUCGGGCgCGGCugcgucgcugcGGCGCg -3'
miRNA:   3'- gCGUCGcCuuGGUCCG-GCUGu----------UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 23012 0.67 0.760864
Target:  5'- uGCAGCacGGuguCCAGGCUGGac-GCGUa -3'
miRNA:   3'- gCGUCG--CCuu-GGUCCGGCUguuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 42725 0.67 0.760864
Target:  5'- gCGCGuGCGccGACCuGGCgCGGCuGGGCGCg -3'
miRNA:   3'- -GCGU-CGCc-UUGGuCCG-GCUG-UUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 129155 0.67 0.760864
Target:  5'- aGUAGCuGGGcgaauaguuuaACaGGGUgGGCGAGCGCg -3'
miRNA:   3'- gCGUCG-CCU-----------UGgUCCGgCUGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 44488 0.67 0.760864
Target:  5'- -cCGGCGcGACCAGGCCGAacuGuUGCa -3'
miRNA:   3'- gcGUCGCcUUGGUCCGGCUguuC-GCG- -5'
6733 3' -58.1 NC_001875.2 + 4861 0.67 0.759918
Target:  5'- gCGCGuGUGGAACCccgcggcGGGCauCGACGGGCu- -3'
miRNA:   3'- -GCGU-CGCCUUGG-------UCCG--GCUGUUCGcg -5'
6733 3' -58.1 NC_001875.2 + 95732 0.67 0.759918
Target:  5'- uGCAGCGcAACCAacauuuuGGCgGAC--GCGCa -3'
miRNA:   3'- gCGUCGCcUUGGU-------CCGgCUGuuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 98796 0.67 0.755167
Target:  5'- uGCAGCGGcccucGCCggggaaaaaacacgcGGGCucCGACGuGGCGCg -3'
miRNA:   3'- gCGUCGCCu----UGG---------------UCCG--GCUGU-UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 50250 0.67 0.751347
Target:  5'- uGCAGUGGAuuCCGcGGCgGGCc-GCGUa -3'
miRNA:   3'- gCGUCGCCUu-GGU-CCGgCUGuuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 110262 0.67 0.751347
Target:  5'- -aCGGCuGGGCC-GGCUGGCcgcgGAGCGCg -3'
miRNA:   3'- gcGUCGcCUUGGuCCGGCUG----UUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 37116 0.67 0.751347
Target:  5'- gGC-GCGGcGCCGcGCCGGCGuuuGCGUc -3'
miRNA:   3'- gCGuCGCCuUGGUcCGGCUGUu--CGCG- -5'
6733 3' -58.1 NC_001875.2 + 42843 0.67 0.751347
Target:  5'- gCGUAGCGcGcaaauCCGGcgcGCCG-CAGGCGCa -3'
miRNA:   3'- -GCGUCGC-Cuu---GGUC---CGGCuGUUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.