miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6733 5' -57.2 NC_001875.2 + 42949 0.66 0.809377
Target:  5'- gUGCGU-CAGCAGCccgcgcaGCGCGCCAa- -3'
miRNA:   3'- aAUGCAgGUCGUUGac-----CGCGCGGUgc -5'
6733 5' -57.2 NC_001875.2 + 4265 0.66 0.809377
Target:  5'- -gGCGUCCAuccuguaaaaguGCAGCa-GCGCGCCGa- -3'
miRNA:   3'- aaUGCAGGU------------CGUUGacCGCGCGGUgc -5'
6733 5' -57.2 NC_001875.2 + 126378 0.66 0.808485
Target:  5'- -----aCCAGCAgaggaaaGCUGGCuGCGCaCACGu -3'
miRNA:   3'- aaugcaGGUCGU-------UGACCG-CGCG-GUGC- -5'
6733 5' -57.2 NC_001875.2 + 42721 0.66 0.808485
Target:  5'- gUGCG-CCGaccuggcGCGGCUgGGCGCGaCCACc -3'
miRNA:   3'- aAUGCaGGU-------CGUUGA-CCGCGC-GGUGc -5'
6733 5' -57.2 NC_001875.2 + 65883 0.66 0.800389
Target:  5'- -cGCGgCgGGCGGCgaGGCgGCGCCGCc -3'
miRNA:   3'- aaUGCaGgUCGUUGa-CCG-CGCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 49674 0.66 0.791246
Target:  5'- -----aCCAGCGACUGGuCGCGguCCGCc -3'
miRNA:   3'- aaugcaGGUCGUUGACC-GCGC--GGUGc -5'
6733 5' -57.2 NC_001875.2 + 247 0.66 0.791246
Target:  5'- aUugGgCCGGCGGCggaucgggcGGCGCGUCAUu -3'
miRNA:   3'- aAugCaGGUCGUUGa--------CCGCGCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 71014 0.66 0.791246
Target:  5'- -aGCGggUCGGC-GCUGGCGCaCCGCu -3'
miRNA:   3'- aaUGCa-GGUCGuUGACCGCGcGGUGc -5'
6733 5' -57.2 NC_001875.2 + 122117 0.66 0.791246
Target:  5'- -cACGUgCCAcGCuuCgGGCGCGgCGCGg -3'
miRNA:   3'- aaUGCA-GGU-CGuuGaCCGCGCgGUGC- -5'
6733 5' -57.2 NC_001875.2 + 5514 0.66 0.788473
Target:  5'- -cACGUCCAGCGGgUGGUcaaugaccagcaccGCcCCGCa -3'
miRNA:   3'- aaUGCAGGUCGUUgACCG--------------CGcGGUGc -5'
6733 5' -57.2 NC_001875.2 + 82997 0.66 0.785688
Target:  5'- aUUGCGUCgaaauaCGGCGucaGCUGGaccgcgcgcagcgagUGCGCCACGu -3'
miRNA:   3'- -AAUGCAG------GUCGU---UGACC---------------GCGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 39832 0.66 0.781955
Target:  5'- -aAC-UCUAGCAGCUcgccgccGCGCGCCGCc -3'
miRNA:   3'- aaUGcAGGUCGUUGAc------CGCGCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 39174 0.66 0.781018
Target:  5'- -gGCGggCCGGCggUUgcguggcguuuacGGUGCGCCGCu -3'
miRNA:   3'- aaUGCa-GGUCGuuGA-------------CCGCGCGGUGc -5'
6733 5' -57.2 NC_001875.2 + 95576 0.67 0.776313
Target:  5'- -gGCG-CCGcgaggccuuaccuuuGCGACgccGGCGCGCUGCGg -3'
miRNA:   3'- aaUGCaGGU---------------CGUUGa--CCGCGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 54621 0.67 0.772526
Target:  5'- ---aGUCCugccGCAcacGCUGuGCgGCGCCGCGg -3'
miRNA:   3'- aaugCAGGu---CGU---UGAC-CG-CGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 31946 0.67 0.772526
Target:  5'- gUUGCGcucgaggcugCCGGCGACgacgaacgcgugUGGCGCGCgUACGg -3'
miRNA:   3'- -AAUGCa---------GGUCGUUG------------ACCGCGCG-GUGC- -5'
6733 5' -57.2 NC_001875.2 + 66237 0.67 0.772526
Target:  5'- -aGCGaccugagCCGGCGGCUGggcgagcacGCGCGCgGCGu -3'
miRNA:   3'- aaUGCa------GGUCGUUGAC---------CGCGCGgUGC- -5'
6733 5' -57.2 NC_001875.2 + 57898 0.67 0.772526
Target:  5'- -gGCGUUUcGCGACUa-CGCGCCGCGc -3'
miRNA:   3'- aaUGCAGGuCGUUGAccGCGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 44549 0.67 0.772526
Target:  5'- -gACGUUgGGCAGCc-GCGCGUUGCGa -3'
miRNA:   3'- aaUGCAGgUCGUUGacCGCGCGGUGC- -5'
6733 5' -57.2 NC_001875.2 + 115464 0.67 0.762968
Target:  5'- -cGCGUUgAGCuAGCgGGCGCgGCCAUu -3'
miRNA:   3'- aaUGCAGgUCG-UUGaCCGCG-CGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.