miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6734 5' -57.6 NC_001875.2 + 41709 0.66 0.782609
Target:  5'- gGGCguaUGCGcGGCgCUGCgcgGCGUCGCAu -3'
miRNA:   3'- aCUG---ACGU-CCG-GGCGaa-CGCAGUGUu -5'
6734 5' -57.6 NC_001875.2 + 112079 0.66 0.773114
Target:  5'- cGGCUGcCGGGCCCuCUUGUaaGcCACGGu -3'
miRNA:   3'- aCUGAC-GUCCGGGcGAACG--CaGUGUU- -5'
6734 5' -57.6 NC_001875.2 + 26283 0.66 0.773114
Target:  5'- aGACgGCGucaaacacGCCCGUggGCGUCACGc -3'
miRNA:   3'- aCUGaCGUc-------CGGGCGaaCGCAGUGUu -5'
6734 5' -57.6 NC_001875.2 + 29480 0.66 0.763489
Target:  5'- gGGCgccGCAGuGUCCGUUUGUG-CGCAAc -3'
miRNA:   3'- aCUGa--CGUC-CGGGCGAACGCaGUGUU- -5'
6734 5' -57.6 NC_001875.2 + 71521 0.66 0.763489
Target:  5'- gGGCUGC-GGCCCcaagaaccGCUgcgacGCGUCGCc- -3'
miRNA:   3'- aCUGACGuCCGGG--------CGAa----CGCAGUGuu -5'
6734 5' -57.6 NC_001875.2 + 39165 0.66 0.753741
Target:  5'- gGGCcgcgagGCGGGCCgGCgguUGCGUgGCGu -3'
miRNA:   3'- aCUGa-----CGUCCGGgCGa--ACGCAgUGUu -5'
6734 5' -57.6 NC_001875.2 + 35615 0.66 0.743882
Target:  5'- -cGCUGCAGGuCCUGC--GCGUCAa-- -3'
miRNA:   3'- acUGACGUCC-GGGCGaaCGCAGUguu -5'
6734 5' -57.6 NC_001875.2 + 129523 0.66 0.743882
Target:  5'- -aGCUGCAGGCCgaGCUggccgagcUGCG-CGCGg -3'
miRNA:   3'- acUGACGUCCGGg-CGA--------ACGCaGUGUu -5'
6734 5' -57.6 NC_001875.2 + 61655 0.67 0.733921
Target:  5'- gGACUGCGGcGCCgaGCcgGCG-CGCAAa -3'
miRNA:   3'- aCUGACGUC-CGGg-CGaaCGCaGUGUU- -5'
6734 5' -57.6 NC_001875.2 + 24012 0.67 0.713732
Target:  5'- cGGCUGCAcGUCCGCUgGCGagCACu- -3'
miRNA:   3'- aCUGACGUcCGGGCGAaCGCa-GUGuu -5'
6734 5' -57.6 NC_001875.2 + 110896 0.67 0.703524
Target:  5'- -cGCUGgAcGGCCCGCggGCGUUugAGc -3'
miRNA:   3'- acUGACgU-CCGGGCGaaCGCAGugUU- -5'
6734 5' -57.6 NC_001875.2 + 13701 0.67 0.693253
Target:  5'- gUGGCUGCAgcuGGCgCGCUUGCa--ACAAc -3'
miRNA:   3'- -ACUGACGU---CCGgGCGAACGcagUGUU- -5'
6734 5' -57.6 NC_001875.2 + 85822 0.67 0.693253
Target:  5'- -cGCUGCAGGCCgGC--GCGccCACAAu -3'
miRNA:   3'- acUGACGUCCGGgCGaaCGCa-GUGUU- -5'
6734 5' -57.6 NC_001875.2 + 112121 0.67 0.682929
Target:  5'- cGGC-GCGGGCgCCGUUUGCGaaaCGCGu -3'
miRNA:   3'- aCUGaCGUCCG-GGCGAACGCa--GUGUu -5'
6734 5' -57.6 NC_001875.2 + 63728 0.68 0.672561
Target:  5'- cGACgGCGGGCgcuUCGCcgGCGUCGCu- -3'
miRNA:   3'- aCUGaCGUCCG---GGCGaaCGCAGUGuu -5'
6734 5' -57.6 NC_001875.2 + 33925 0.68 0.620387
Target:  5'- cGACacgugaGguGGCCCaGCUUGCGcCGCGu -3'
miRNA:   3'- aCUGa-----CguCCGGG-CGAACGCaGUGUu -5'
6734 5' -57.6 NC_001875.2 + 31011 0.69 0.578758
Target:  5'- -cGCUGCAGGCCgcggCGUUUGCGgcgguuuugCGCAAc -3'
miRNA:   3'- acUGACGUCCGG----GCGAACGCa--------GUGUU- -5'
6734 5' -57.6 NC_001875.2 + 117190 0.7 0.537761
Target:  5'- gUGGCUGCAGGCCgGCaccuCGUCgaaGCGAa -3'
miRNA:   3'- -ACUGACGUCCGGgCGaac-GCAG---UGUU- -5'
6734 5' -57.6 NC_001875.2 + 125584 0.7 0.52766
Target:  5'- --gUUGCcacGGCCuCGUUUGCGUCACAGu -3'
miRNA:   3'- acuGACGu--CCGG-GCGAACGCAGUGUU- -5'
6734 5' -57.6 NC_001875.2 + 108832 0.7 0.517631
Target:  5'- cGGCUGCGGGCaCgGCggcUGCGggCACGg -3'
miRNA:   3'- aCUGACGUCCG-GgCGa--ACGCa-GUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.