miRNA display CGI


Results 41 - 60 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6735 3' -57.2 NC_001875.2 + 31684 0.66 0.817641
Target:  5'- gCGUGCCG-GCGUGGAcCGCC-GCUUGc -3'
miRNA:   3'- -GCGCGGCgCGCGUUUuGUGGaCGAGC- -5'
6735 3' -57.2 NC_001875.2 + 84783 0.66 0.808915
Target:  5'- uCGCuGCCGCuCGCAAcguACugCUGCg-- -3'
miRNA:   3'- -GCG-CGGCGcGCGUUu--UGugGACGagc -5'
6735 3' -57.2 NC_001875.2 + 116769 0.66 0.808033
Target:  5'- gGCGCUGCGCGUgcaauGAGuugaugccgggguACACCUGgUgCGa -3'
miRNA:   3'- gCGCGGCGCGCG-----UUU-------------UGUGGACgA-GC- -5'
6735 3' -57.2 NC_001875.2 + 74235 0.66 0.817641
Target:  5'- uCGCGCCGUGCcuGCccuACACCacGCUUc -3'
miRNA:   3'- -GCGCGGCGCG--CGuuuUGUGGa-CGAGc -5'
6735 3' -57.2 NC_001875.2 + 42387 0.66 0.808915
Target:  5'- uCGacaGUCuCGCuCAGAGCACUUGCUCGc -3'
miRNA:   3'- -GCg--CGGcGCGcGUUUUGUGGACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 34355 0.66 0.83458
Target:  5'- gCGCGCgGCGCaaGAGACGCaguUGCUg- -3'
miRNA:   3'- -GCGCGgCGCGcgUUUUGUGg--ACGAgc -5'
6735 3' -57.2 NC_001875.2 + 3554 0.66 0.842776
Target:  5'- gGCGCCGUgGCGCGucucAAAUACUUGUcauacauuUCGc -3'
miRNA:   3'- gCGCGGCG-CGCGU----UUUGUGGACG--------AGC- -5'
6735 3' -57.2 NC_001875.2 + 5589 0.66 0.808915
Target:  5'- gCGUGUCGCGuCGCAAcaGAUGCgUGCaCGg -3'
miRNA:   3'- -GCGCGGCGC-GCGUU--UUGUGgACGaGC- -5'
6735 3' -57.2 NC_001875.2 + 73974 0.66 0.826199
Target:  5'- uCGCGCaaaGCGUGCuc-AUACC-GCUCc -3'
miRNA:   3'- -GCGCGg--CGCGCGuuuUGUGGaCGAGc -5'
6735 3' -57.2 NC_001875.2 + 18762 0.66 0.808033
Target:  5'- gGCGCUGaCGCGCGucGCcaucaaaGCCaGCUCu -3'
miRNA:   3'- gCGCGGC-GCGCGUuuUG-------UGGaCGAGc -5'
6735 3' -57.2 NC_001875.2 + 131183 0.66 0.826199
Target:  5'- aCGUGCCGUGCcCGG---ACCUGUUUGa -3'
miRNA:   3'- -GCGCGGCGCGcGUUuugUGGACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 10025 0.66 0.850781
Target:  5'- aCGUGaCCGUGauCAAGccACAgCUGCUCGa -3'
miRNA:   3'- -GCGC-GGCGCgcGUUU--UGUgGACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 66041 0.66 0.850781
Target:  5'- gGCGCCGCGC---AGGCACC-GCgCGn -3'
miRNA:   3'- gCGCGGCGCGcguUUUGUGGaCGaGC- -5'
6735 3' -57.2 NC_001875.2 + 100266 0.66 0.85157
Target:  5'- uGgGCgGCGCGCAAGGaagccgccgggcccaACCUGCa-- -3'
miRNA:   3'- gCgCGgCGCGCGUUUUg--------------UGGACGagc -5'
6735 3' -57.2 NC_001875.2 + 83591 0.66 0.83458
Target:  5'- gGaCGCCGCGCGCcuuAuuCACggUGUUCGg -3'
miRNA:   3'- gC-GCGGCGCGCGu--UuuGUGg-ACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 84308 0.66 0.83458
Target:  5'- gCGCGCCuaGUaGCG--GCGCCUGCg-- -3'
miRNA:   3'- -GCGCGGcgCG-CGUuuUGUGGACGagc -5'
6735 3' -57.2 NC_001875.2 + 6614 0.66 0.842776
Target:  5'- cCGCGCCGCaCGCGGugUACUcgUGCcagCGa -3'
miRNA:   3'- -GCGCGGCGcGCGUUuuGUGG--ACGa--GC- -5'
6735 3' -57.2 NC_001875.2 + 25028 0.66 0.842776
Target:  5'- uGCGCUgGC-CGCc---CGCCUGCUCa -3'
miRNA:   3'- gCGCGG-CGcGCGuuuuGUGGACGAGc -5'
6735 3' -57.2 NC_001875.2 + 66787 0.66 0.837881
Target:  5'- gGCGCCGCcguuguaaaacuuuuGCGCGu-ACGCCgGCagCGa -3'
miRNA:   3'- gCGCGGCG---------------CGCGUuuUGUGGaCGa-GC- -5'
6735 3' -57.2 NC_001875.2 + 88250 0.66 0.826199
Target:  5'- gCGCGCCGC-CGCugc-CGCCguaCUCGu -3'
miRNA:   3'- -GCGCGGCGcGCGuuuuGUGGac-GAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.