miRNA display CGI


Results 41 - 60 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6735 5' -53.5 NC_001875.2 + 39640 0.74 0.564979
Target:  5'- gGCGCGCAGCg--AAcCGCGCGCgaguuuggGCCg -3'
miRNA:   3'- gCGCGUGUUGagaUU-GUGCGCGa-------CGG- -5'
6735 5' -53.5 NC_001875.2 + 62510 0.74 0.564979
Target:  5'- gGCGCGCGACcCaAACugGCGCcgcGCCc -3'
miRNA:   3'- gCGCGUGUUGaGaUUGugCGCGa--CGG- -5'
6735 5' -53.5 NC_001875.2 + 94451 0.74 0.564979
Target:  5'- gGCGCACAACUCgguC-UGCugGCUGCCc -3'
miRNA:   3'- gCGCGUGUUGAGauuGuGCG--CGACGG- -5'
6735 5' -53.5 NC_001875.2 + 9021 0.74 0.574304
Target:  5'- aGCGCuGCAACUUUGaccggcaACACGUGC-GCCa -3'
miRNA:   3'- gCGCG-UGUUGAGAU-------UGUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 47682 0.74 0.575342
Target:  5'- aGaCGCugAACUC-GACACGuCGCUcGCCg -3'
miRNA:   3'- gC-GCGugUUGAGaUUGUGC-GCGA-CGG- -5'
6735 5' -53.5 NC_001875.2 + 49749 0.74 0.584706
Target:  5'- gCGCGCugGugguagcGCUCgucGGCGCGCaGCUGCUu -3'
miRNA:   3'- -GCGCGugU-------UGAGa--UUGUGCG-CGACGG- -5'
6735 5' -53.5 NC_001875.2 + 96100 0.74 0.585748
Target:  5'- gGCGUACAACUCUuGgAUGCGCcgGUCc -3'
miRNA:   3'- gCGCGUGUUGAGAuUgUGCGCGa-CGG- -5'
6735 5' -53.5 NC_001875.2 + 83250 0.74 0.585748
Target:  5'- gCGUGUACcACUCUuuaaGGCACGCGUacaugGCCg -3'
miRNA:   3'- -GCGCGUGuUGAGA----UUGUGCGCGa----CGG- -5'
6735 5' -53.5 NC_001875.2 + 39318 0.74 0.585748
Target:  5'- cCGUGCcgGCGGCgu--GCGCGCGCUGCa -3'
miRNA:   3'- -GCGCG--UGUUGagauUGUGCGCGACGg -5'
6735 5' -53.5 NC_001875.2 + 96041 0.74 0.596189
Target:  5'- gGCGCGCGAgUUUAACuguuUGCGC-GCCa -3'
miRNA:   3'- gCGCGUGUUgAGAUUGu---GCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 30606 0.74 0.606658
Target:  5'- aCGCGCGCAAC----GCGCGCcaGCUGCg -3'
miRNA:   3'- -GCGCGUGUUGagauUGUGCG--CGACGg -5'
6735 5' -53.5 NC_001875.2 + 7089 0.74 0.606658
Target:  5'- uGUGCGCAGacaugC-AGCGCGCGCUGgCCg -3'
miRNA:   3'- gCGCGUGUUga---GaUUGUGCGCGAC-GG- -5'
6735 5' -53.5 NC_001875.2 + 83025 0.74 0.616097
Target:  5'- cCGCGCGCAGCgagugCgc-CACGUgaucgcgGCUGCCg -3'
miRNA:   3'- -GCGCGUGUUGa----GauuGUGCG-------CGACGG- -5'
6735 5' -53.5 NC_001875.2 + 30969 0.74 0.616097
Target:  5'- aCGCGCGCGcugcgccucgcGCUCaAaaagcaagauuacGCGCGCGCgGCCg -3'
miRNA:   3'- -GCGCGUGU-----------UGAGaU-------------UGUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 50128 0.74 0.617147
Target:  5'- aCGCGCACGuagcGCUCUuccAGCGCcugGCGC-GCCu -3'
miRNA:   3'- -GCGCGUGU----UGAGA---UUGUG---CGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 102382 0.74 0.621346
Target:  5'- gGCGCGCAACUCUuucagcaaAacaagguacgugucgGCGuCGCGCUcGCCg -3'
miRNA:   3'- gCGCGUGUUGAGA--------U---------------UGU-GCGCGA-CGG- -5'
6735 5' -53.5 NC_001875.2 + 9838 0.73 0.627648
Target:  5'- aCGCGCACAAUUUUuucGACAgcgcCGCGCaGCUg -3'
miRNA:   3'- -GCGCGUGUUGAGA---UUGU----GCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 110016 0.73 0.627648
Target:  5'- aGCGC-CAGCUUggcaAACGCGCGCaGCa -3'
miRNA:   3'- gCGCGuGUUGAGa---UUGUGCGCGaCGg -5'
6735 5' -53.5 NC_001875.2 + 42209 0.73 0.627648
Target:  5'- aGCGCGCGGCg---GCACGCGUggUGCUu -3'
miRNA:   3'- gCGCGUGUUGagauUGUGCGCG--ACGG- -5'
6735 5' -53.5 NC_001875.2 + 7261 0.73 0.627648
Target:  5'- gGCGguCAAUgUCggcAGCGCGCGCUGCa -3'
miRNA:   3'- gCGCguGUUG-AGa--UUGUGCGCGACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.