miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6736 3' -51.8 NC_001875.2 + 65768 0.67 0.97074
Target:  5'- aGC-Cg--GCGGCUGGGCGAGCaCgcgcgCGGc -3'
miRNA:   3'- -CGuGaaaUGCCGGUCCGUUUG-Ga----GCC- -5'
6736 3' -51.8 NC_001875.2 + 61604 0.67 0.95935
Target:  5'- gGCGCcg-GCGGCgcuuCGGGCugugucggcggcGCCUCGGg -3'
miRNA:   3'- -CGUGaaaUGCCG----GUCCGuu----------UGGAGCC- -5'
6736 3' -51.8 NC_001875.2 + 70968 0.67 0.960461
Target:  5'- -aAUUggACGGCCGGGCcguccacGAGCCU-GGa -3'
miRNA:   3'- cgUGAaaUGCCGGUCCG-------UUUGGAgCC- -5'
6736 3' -51.8 NC_001875.2 + 2759 0.67 0.964359
Target:  5'- gGCGCca-GCGGCUgcucccGGGCAGGCUguaaaucuUCGGg -3'
miRNA:   3'- -CGUGaaaUGCCGG------UCCGUUUGG--------AGCC- -5'
6736 3' -51.8 NC_001875.2 + 105908 0.67 0.967661
Target:  5'- gGCGCg--GCGGCCAccaCGAAaaaCUCGGg -3'
miRNA:   3'- -CGUGaaaUGCCGGUcc-GUUUg--GAGCC- -5'
6736 3' -51.8 NC_001875.2 + 63130 0.67 0.967661
Target:  5'- ------aGCGGCCGGGCGcgcGGCCggcgcaCGGg -3'
miRNA:   3'- cgugaaaUGCCGGUCCGU---UUGGa-----GCC- -5'
6736 3' -51.8 NC_001875.2 + 39656 0.67 0.960828
Target:  5'- cGCGCgagUUugGGCCGgcGGCGcGCggCGGc -3'
miRNA:   3'- -CGUGa--AAugCCGGU--CCGUuUGgaGCC- -5'
6736 3' -51.8 NC_001875.2 + 21575 0.67 0.973603
Target:  5'- cGCGCUccGCGGCCAgccGGCccAGCCguUCGa -3'
miRNA:   3'- -CGUGAaaUGCCGGU---CCGu-UUGG--AGCc -5'
6736 3' -51.8 NC_001875.2 + 29199 0.67 0.973603
Target:  5'- gGCaACUUUggccaguugaugGCGGCCAagcuGGCAAACC-CGc -3'
miRNA:   3'- -CG-UGAAA------------UGCCGGU----CCGUUUGGaGCc -5'
6736 3' -51.8 NC_001875.2 + 35508 0.67 0.964359
Target:  5'- cGUAUUUUGCGGCCAaGUAugacgcGGCCaCGGu -3'
miRNA:   3'- -CGUGAAAUGCCGGUcCGU------UUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 65450 0.67 0.967341
Target:  5'- gGCGgUcgGUGGCCAGGUcgaacacgugcucGAACCUCGa -3'
miRNA:   3'- -CGUgAaaUGCCGGUCCG-------------UUUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 66723 0.67 0.967661
Target:  5'- uGUACUgcACGGCgAGGCuGAGCugCUUGGc -3'
miRNA:   3'- -CGUGAaaUGCCGgUCCG-UUUG--GAGCC- -5'
6736 3' -51.8 NC_001875.2 + 100594 0.67 0.967661
Target:  5'- cGUACgcg--GGCCGGGCGccGGCCgCGGc -3'
miRNA:   3'- -CGUGaaaugCCGGUCCGU--UUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 122511 0.67 0.97074
Target:  5'- gGCGacaucCGGCCGGGCA-GCUUCGc -3'
miRNA:   3'- -CGUgaaauGCCGGUCCGUuUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 96757 0.66 0.986681
Target:  5'- cGUACUUgacgccgucgaUGCGGCC--GCAAACCagcaCGGg -3'
miRNA:   3'- -CGUGAA-----------AUGCCGGucCGUUUGGa---GCC- -5'
6736 3' -51.8 NC_001875.2 + 289 0.66 0.980971
Target:  5'- cGCAUgc--UGGCCAGGUccagcACCUCGu -3'
miRNA:   3'- -CGUGaaauGCCGGUCCGuu---UGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 55723 0.66 0.982848
Target:  5'- cGCGCaaaUACGGCCGagcguggccaugcGGCccuCUUCGGg -3'
miRNA:   3'- -CGUGaa-AUGCCGGU-------------CCGuuuGGAGCC- -5'
6736 3' -51.8 NC_001875.2 + 4452 0.66 0.983047
Target:  5'- aGCACUU--UGGCCAGGCucugagcGCCguccgCGc -3'
miRNA:   3'- -CGUGAAauGCCGGUCCGuu-----UGGa----GCc -5'
6736 3' -51.8 NC_001875.2 + 111868 0.66 0.983047
Target:  5'- cGCACgucagcaACGGCgAGGC--GCCggcCGGa -3'
miRNA:   3'- -CGUGaaa----UGCCGgUCCGuuUGGa--GCC- -5'
6736 3' -51.8 NC_001875.2 + 7047 0.66 0.983047
Target:  5'- cGCGCUUguCGGCCuGGUu--CCgcugCGGc -3'
miRNA:   3'- -CGUGAAauGCCGGuCCGuuuGGa---GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.