miRNA display CGI


Results 61 - 72 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6736 3' -51.8 NC_001875.2 + 111868 0.66 0.983047
Target:  5'- cGCACgucagcaACGGCgAGGC--GCCggcCGGa -3'
miRNA:   3'- -CGUGaaa----UGCCGgUCCGuuUGGa--GCC- -5'
6736 3' -51.8 NC_001875.2 + 112839 0.67 0.97074
Target:  5'- aGCGCgUUGCGGCCuGcGCGcacuGCCgUGGa -3'
miRNA:   3'- -CGUGaAAUGCCGGuC-CGUu---UGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 113889 0.69 0.918026
Target:  5'- cGCGCUggcUGGCCGGGCAcAAaaaCUCGu -3'
miRNA:   3'- -CGUGAaauGCCGGUCCGU-UUg--GAGCc -5'
6736 3' -51.8 NC_001875.2 + 115683 0.66 0.984947
Target:  5'- uGCACacgUugGG-CAGGCAuuCCagGGg -3'
miRNA:   3'- -CGUGaa-AugCCgGUCCGUuuGGagCC- -5'
6736 3' -51.8 NC_001875.2 + 117335 0.78 0.496528
Target:  5'- aCACggcGCGGCgCGGGCGAACCggCGGg -3'
miRNA:   3'- cGUGaaaUGCCG-GUCCGUUUGGa-GCC- -5'
6736 3' -51.8 NC_001875.2 + 119329 0.66 0.980971
Target:  5'- cGCACU--GCGccCCAGGCGcuuuguaaauaAGCCUCGu -3'
miRNA:   3'- -CGUGAaaUGCc-GGUCCGU-----------UUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 119645 1.12 0.004109
Target:  5'- gGCACUUUACGGCCAGGCAAACCUCGGc -3'
miRNA:   3'- -CGUGAAAUGCCGGUCCGUUUGGAGCC- -5'
6736 3' -51.8 NC_001875.2 + 121458 0.68 0.938086
Target:  5'- gGCGCggcggcguucaaagUUUuCGGCCAGGCcguAGCC-CGGc -3'
miRNA:   3'- -CGUG--------------AAAuGCCGGUCCGu--UUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 122133 0.71 0.862968
Target:  5'- gGCGCggcGCGGCCGgcgcgcacgacGGCGAGCCccaaCGGa -3'
miRNA:   3'- -CGUGaaaUGCCGGU-----------CCGUUUGGa---GCC- -5'
6736 3' -51.8 NC_001875.2 + 122511 0.67 0.97074
Target:  5'- gGCGacaucCGGCCGGGCA-GCUUCGc -3'
miRNA:   3'- -CGUgaaauGCCGGUCCGUuUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 124697 0.71 0.837668
Target:  5'- cGCGCUggcacgUGCGGUgaagcaaCAGGCAcGCgUCGGc -3'
miRNA:   3'- -CGUGAa-----AUGCCG-------GUCCGUuUGgAGCC- -5'
6736 3' -51.8 NC_001875.2 + 126310 0.66 0.983047
Target:  5'- cGCGCgccucaacgGCGGCCGGcGUAAACUgcgCGc -3'
miRNA:   3'- -CGUGaaa------UGCCGGUC-CGUUUGGa--GCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.