miRNA display CGI


Results 41 - 60 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6736 3' -51.8 NC_001875.2 + 61604 0.67 0.95935
Target:  5'- gGCGCcg-GCGGCgcuuCGGGCugugucggcggcGCCUCGGg -3'
miRNA:   3'- -CGUGaaaUGCCG----GUCCGuu----------UGGAGCC- -5'
6736 3' -51.8 NC_001875.2 + 55723 0.66 0.982848
Target:  5'- cGCGCaaaUACGGCCGagcguggccaugcGGCccuCUUCGGg -3'
miRNA:   3'- -CGUGaa-AUGCCGGU-------------CCGuuuGGAGCC- -5'
6736 3' -51.8 NC_001875.2 + 55083 0.66 0.976257
Target:  5'- aGCACU---CGGCCAGcGCGu-CCUUGu -3'
miRNA:   3'- -CGUGAaauGCCGGUC-CGUuuGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 54594 0.68 0.948806
Target:  5'- cGCuGCUUUGCgcgaGGCUGGGCGAAgaUUCGGu -3'
miRNA:   3'- -CG-UGAAAUG----CCGGUCCGUUUg-GAGCC- -5'
6736 3' -51.8 NC_001875.2 + 54365 0.7 0.905733
Target:  5'- gGCGCg-UugGGCgAGcGCAcGCCUUGGu -3'
miRNA:   3'- -CGUGaaAugCCGgUC-CGUuUGGAGCC- -5'
6736 3' -51.8 NC_001875.2 + 53532 0.67 0.97074
Target:  5'- cGCACgucgUGCGcuaCCAGcGCGAGCCgcaaaCGGg -3'
miRNA:   3'- -CGUGaa--AUGCc--GGUC-CGUUUGGa----GCC- -5'
6736 3' -51.8 NC_001875.2 + 53432 0.68 0.944309
Target:  5'- aGCGCgcacACGGCCAGcGCGugcAGCaCUgCGGg -3'
miRNA:   3'- -CGUGaaa-UGCCGGUC-CGU---UUG-GA-GCC- -5'
6736 3' -51.8 NC_001875.2 + 53001 0.75 0.645852
Target:  5'- uGCACUUUGCGGCCAGccugucggugcccaCGGACUaCGGg -3'
miRNA:   3'- -CGUGAAAUGCCGGUCc-------------GUUUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 49854 0.66 0.980971
Target:  5'- uGCGCgc--CGGCC-GGCGcGCCUUGc -3'
miRNA:   3'- -CGUGaaauGCCGGuCCGUuUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 47667 0.69 0.929303
Target:  5'- cGCACggacGCGGCCGcGGCGcGCCgcgCGu -3'
miRNA:   3'- -CGUGaaa-UGCCGGU-CCGUuUGGa--GCc -5'
6736 3' -51.8 NC_001875.2 + 45130 0.66 0.978711
Target:  5'- aGCAgUgu-CGGCCGGGCGgcaaAAUUUCGu -3'
miRNA:   3'- -CGUgAaauGCCGGUCCGU----UUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 43818 0.66 0.984947
Target:  5'- -gGCUUUGcCGGCUAGcGCAAGCUUg-- -3'
miRNA:   3'- cgUGAAAU-GCCGGUC-CGUUUGGAgcc -5'
6736 3' -51.8 NC_001875.2 + 42106 0.72 0.81136
Target:  5'- aCACUcgUACGGCCGGcGCAguccgcuGAUCUCGa -3'
miRNA:   3'- cGUGAa-AUGCCGGUC-CGU-------UUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 41132 0.68 0.93956
Target:  5'- cGCGCUUgaccgGCGGCCGcgccGGCAAcCCcaUCGu -3'
miRNA:   3'- -CGUGAAa----UGCCGGU----CCGUUuGG--AGCc -5'
6736 3' -51.8 NC_001875.2 + 39656 0.67 0.960828
Target:  5'- cGCGCgagUUugGGCCGgcGGCGcGCggCGGc -3'
miRNA:   3'- -CGUGa--AAugCCGGU--CCGUuUGgaGCC- -5'
6736 3' -51.8 NC_001875.2 + 39157 0.73 0.735289
Target:  5'- cCAUUUUGgGGCCgcgAGGCGGGCCggCGGu -3'
miRNA:   3'- cGUGAAAUgCCGG---UCCGUUUGGa-GCC- -5'
6736 3' -51.8 NC_001875.2 + 35508 0.67 0.964359
Target:  5'- cGUAUUUUGCGGCCAaGUAugacgcGGCCaCGGu -3'
miRNA:   3'- -CGUGAAAUGCCGGUcCGU------UUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 31983 0.68 0.944309
Target:  5'- gGCGCgcgUACGGCCGGuuuGUGAGCggCGGc -3'
miRNA:   3'- -CGUGaa-AUGCCGGUC---CGUUUGgaGCC- -5'
6736 3' -51.8 NC_001875.2 + 31557 0.69 0.934559
Target:  5'- cGCGCUgcaggUugGGCCcGGCGGcuuCCUUGc -3'
miRNA:   3'- -CGUGAa----AugCCGGuCCGUUu--GGAGCc -5'
6736 3' -51.8 NC_001875.2 + 29199 0.67 0.973603
Target:  5'- gGCaACUUUggccaguugaugGCGGCCAagcuGGCAAACC-CGc -3'
miRNA:   3'- -CG-UGAAA------------UGCCGGU----CCGUUUGGaGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.