miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6736 3' -51.8 NC_001875.2 + 110894 0.69 0.918026
Target:  5'- uGCGCUggACGGCCcgcGGGCGuuugagcuGGCCaUGGc -3'
miRNA:   3'- -CGUGAaaUGCCGG---UCCGU--------UUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 39157 0.73 0.735289
Target:  5'- cCAUUUUGgGGCCgcgAGGCGGGCCggCGGu -3'
miRNA:   3'- cGUGAAAUgCCGG---UCCGUUUGGa-GCC- -5'
6736 3' -51.8 NC_001875.2 + 17083 0.71 0.85503
Target:  5'- -aGCUggucaGGCCGGGCAAGCCgcgCGc -3'
miRNA:   3'- cgUGAaaug-CCGGUCCGUUUGGa--GCc -5'
6736 3' -51.8 NC_001875.2 + 96139 0.7 0.899209
Target:  5'- aCGCgaUGCGGCCcaacccgcAGGUGGACCUCa- -3'
miRNA:   3'- cGUGaaAUGCCGG--------UCCGUUUGGAGcc -5'
6736 3' -51.8 NC_001875.2 + 124697 0.71 0.837668
Target:  5'- cGCGCUggcacgUGCGGUgaagcaaCAGGCAcGCgUCGGc -3'
miRNA:   3'- -CGUGAa-----AUGCCG-------GUCCGUuUGgAGCC- -5'
6736 3' -51.8 NC_001875.2 + 126310 0.66 0.983047
Target:  5'- cGCGCgccucaacgGCGGCCGGcGUAAACUgcgCGc -3'
miRNA:   3'- -CGUGaaa------UGCCGGUC-CGUUUGGa--GCc -5'
6736 3' -51.8 NC_001875.2 + 47667 0.69 0.929303
Target:  5'- cGCACggacGCGGCCGcGGCGcGCCgcgCGu -3'
miRNA:   3'- -CGUGaaa-UGCCGGU-CCGUuUGGa--GCc -5'
6736 3' -51.8 NC_001875.2 + 110252 0.68 0.93956
Target:  5'- aGCugUUcgaACGGCUGGGCcggcuGGCCgCGGa -3'
miRNA:   3'- -CGugAAa--UGCCGGUCCGu----UUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 53432 0.68 0.944309
Target:  5'- aGCGCgcacACGGCCAGcGCGugcAGCaCUgCGGg -3'
miRNA:   3'- -CGUGaaa-UGCCGGUC-CGU---UUG-GA-GCC- -5'
6736 3' -51.8 NC_001875.2 + 111868 0.66 0.983047
Target:  5'- cGCACgucagcaACGGCgAGGC--GCCggcCGGa -3'
miRNA:   3'- -CGUGaaa----UGCCGgUCCGuuUGGa--GCC- -5'
6736 3' -51.8 NC_001875.2 + 4452 0.66 0.983047
Target:  5'- aGCACUU--UGGCCAGGCucugagcGCCguccgCGc -3'
miRNA:   3'- -CGUGAAauGCCGGUCCGuu-----UGGa----GCc -5'
6736 3' -51.8 NC_001875.2 + 55723 0.66 0.982848
Target:  5'- cGCGCaaaUACGGCCGagcguggccaugcGGCccuCUUCGGg -3'
miRNA:   3'- -CGUGaa-AUGCCGGU-------------CCGuuuGGAGCC- -5'
6736 3' -51.8 NC_001875.2 + 289 0.66 0.980971
Target:  5'- cGCAUgc--UGGCCAGGUccagcACCUCGu -3'
miRNA:   3'- -CGUGaaauGCCGGUCCGuu---UGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 49854 0.66 0.980971
Target:  5'- uGCGCgc--CGGCC-GGCGcGCCUUGc -3'
miRNA:   3'- -CGUGaaauGCCGGuCCGUuUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 55083 0.66 0.976257
Target:  5'- aGCACU---CGGCCAGcGCGu-CCUUGu -3'
miRNA:   3'- -CGUGAaauGCCGGUC-CGUuuGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 73992 0.66 0.976512
Target:  5'- uGCAaa--GCGGCCcGGCGGACCgguacgagagcaccgCGGc -3'
miRNA:   3'- -CGUgaaaUGCCGGuCCGUUUGGa--------------GCC- -5'
6736 3' -51.8 NC_001875.2 + 100594 0.67 0.967661
Target:  5'- cGUACgcg--GGCCGGGCGccGGCCgCGGc -3'
miRNA:   3'- -CGUGaaaugCCGGUCCGU--UUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 66723 0.67 0.967661
Target:  5'- uGUACUgcACGGCgAGGCuGAGCugCUUGGc -3'
miRNA:   3'- -CGUGAaaUGCCGgUCCG-UUUG--GAGCC- -5'
6736 3' -51.8 NC_001875.2 + 65450 0.67 0.967341
Target:  5'- gGCGgUcgGUGGCCAGGUcgaacacgugcucGAACCUCGa -3'
miRNA:   3'- -CGUgAaaUGCCGGUCCG-------------UUUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 31983 0.68 0.944309
Target:  5'- gGCGCgcgUACGGCCGGuuuGUGAGCggCGGc -3'
miRNA:   3'- -CGUGaa-AUGCCGGUC---CGUUUGgaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.