miRNA display CGI


Results 61 - 72 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6736 3' -51.8 NC_001875.2 + 55723 0.66 0.982848
Target:  5'- cGCGCaaaUACGGCCGagcguggccaugcGGCccuCUUCGGg -3'
miRNA:   3'- -CGUGaa-AUGCCGGU-------------CCGuuuGGAGCC- -5'
6736 3' -51.8 NC_001875.2 + 289 0.66 0.980971
Target:  5'- cGCAUgc--UGGCCAGGUccagcACCUCGu -3'
miRNA:   3'- -CGUGaaauGCCGGUCCGuu---UGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 4452 0.66 0.983047
Target:  5'- aGCACUU--UGGCCAGGCucugagcGCCguccgCGc -3'
miRNA:   3'- -CGUGAAauGCCGGUCCGuu-----UGGa----GCc -5'
6736 3' -51.8 NC_001875.2 + 49854 0.66 0.980971
Target:  5'- uGCGCgc--CGGCC-GGCGcGCCUUGc -3'
miRNA:   3'- -CGUGaaauGCCGGuCCGUuUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 73992 0.66 0.976512
Target:  5'- uGCAaa--GCGGCCcGGCGGACCgguacgagagcaccgCGGc -3'
miRNA:   3'- -CGUgaaaUGCCGGuCCGUUUGGa--------------GCC- -5'
6736 3' -51.8 NC_001875.2 + 55083 0.66 0.976257
Target:  5'- aGCACU---CGGCCAGcGCGu-CCUUGu -3'
miRNA:   3'- -CGUGAaauGCCGGUC-CGUuuGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 100594 0.67 0.967661
Target:  5'- cGUACgcg--GGCCGGGCGccGGCCgCGGc -3'
miRNA:   3'- -CGUGaaaugCCGGUCCGU--UUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 66723 0.67 0.967661
Target:  5'- uGUACUgcACGGCgAGGCuGAGCugCUUGGc -3'
miRNA:   3'- -CGUGAaaUGCCGgUCCG-UUUG--GAGCC- -5'
6736 3' -51.8 NC_001875.2 + 65450 0.67 0.967341
Target:  5'- gGCGgUcgGUGGCCAGGUcgaacacgugcucGAACCUCGa -3'
miRNA:   3'- -CGUgAaaUGCCGGUCCG-------------UUUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 35508 0.67 0.964359
Target:  5'- cGUAUUUUGCGGCCAaGUAugacgcGGCCaCGGu -3'
miRNA:   3'- -CGUGAAAUGCCGGUcCGU------UUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 39656 0.67 0.960828
Target:  5'- cGCGCgagUUugGGCCGgcGGCGcGCggCGGc -3'
miRNA:   3'- -CGUGa--AAugCCGGU--CCGUuUGgaGCC- -5'
6736 3' -51.8 NC_001875.2 + 117335 0.78 0.496528
Target:  5'- aCACggcGCGGCgCGGGCGAACCggCGGg -3'
miRNA:   3'- cGUGaaaUGCCG-GUCCGUUUGGa-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.