miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6738 5' -57.8 NC_001875.2 + 101979 0.66 0.762891
Target:  5'- -gCGACGCAGgcguugugcauuGCGGCGUGCgCGgCGg -3'
miRNA:   3'- aaGUUGUGUU------------CGCCGCACGgGCgGUu -5'
6738 5' -57.8 NC_001875.2 + 33218 0.66 0.762891
Target:  5'- --aAACGCGGGC-GCGgGCUCGCCGGg -3'
miRNA:   3'- aagUUGUGUUCGcCGCaCGGGCGGUU- -5'
6738 5' -57.8 NC_001875.2 + 15082 0.66 0.762891
Target:  5'- -aCAGCAaccAGCaGC-UGCCCGCCAu -3'
miRNA:   3'- aaGUUGUgu-UCGcCGcACGGGCGGUu -5'
6738 5' -57.8 NC_001875.2 + 13632 0.66 0.762891
Target:  5'- --uGugGCAGGCGGU-UGCCgCGCCGc -3'
miRNA:   3'- aagUugUGUUCGCCGcACGG-GCGGUu -5'
6738 5' -57.8 NC_001875.2 + 39312 0.66 0.761917
Target:  5'- ---uGCACAccgugccGGCGGCGUGCgCGCg-- -3'
miRNA:   3'- aaguUGUGU-------UCGCCGCACGgGCGguu -5'
6738 5' -57.8 NC_001875.2 + 43401 0.66 0.759964
Target:  5'- --gGACACGGGCGacaagcagauuugcGCGUGCgUGCCGu -3'
miRNA:   3'- aagUUGUGUUCGC--------------CGCACGgGCGGUu -5'
6738 5' -57.8 NC_001875.2 + 76799 0.66 0.753094
Target:  5'- gUCGuGCgACAAGCuGGCGUGuUUCGCCGAg -3'
miRNA:   3'- aAGU-UG-UGUUCG-CCGCAC-GGGCGGUU- -5'
6738 5' -57.8 NC_001875.2 + 131537 0.66 0.753094
Target:  5'- -gCGGCGCAaAGCGcGCccGUGUCCGUCAAc -3'
miRNA:   3'- aaGUUGUGU-UCGC-CG--CACGGGCGGUU- -5'
6738 5' -57.8 NC_001875.2 + 13355 0.66 0.753094
Target:  5'- --gGACACuuGGCGuGCGUGCuaGCCGu -3'
miRNA:   3'- aagUUGUGu-UCGC-CGCACGggCGGUu -5'
6738 5' -57.8 NC_001875.2 + 82317 0.66 0.752108
Target:  5'- -cCAGCACcAGCGacuggucGCG-GUCCGCCGAg -3'
miRNA:   3'- aaGUUGUGuUCGC-------CGCaCGGGCGGUU- -5'
6738 5' -57.8 NC_001875.2 + 9318 0.66 0.743185
Target:  5'- --gGACGCAAuCGGCGaagcUGCCCgGCCGGa -3'
miRNA:   3'- aagUUGUGUUcGCCGC----ACGGG-CGGUU- -5'
6738 5' -57.8 NC_001875.2 + 86704 0.66 0.743185
Target:  5'- -gUAGCgGCAAGUGGC--GCCCGCUAGa -3'
miRNA:   3'- aaGUUG-UGUUCGCCGcaCGGGCGGUU- -5'
6738 5' -57.8 NC_001875.2 + 108489 0.66 0.733174
Target:  5'- aUCGGCAacc-CGGCGUGCaacCCGCCGu -3'
miRNA:   3'- aAGUUGUguucGCCGCACG---GGCGGUu -5'
6738 5' -57.8 NC_001875.2 + 6484 0.66 0.72307
Target:  5'- -aCGGCGCccaacGCGGaGUGCCgCGCCAAc -3'
miRNA:   3'- aaGUUGUGuu---CGCCgCACGG-GCGGUU- -5'
6738 5' -57.8 NC_001875.2 + 16393 0.66 0.72307
Target:  5'- cUCAACGCGGuagguGCGGUGUucGUcgCCGCCAAa -3'
miRNA:   3'- aAGUUGUGUU-----CGCCGCA--CG--GGCGGUU- -5'
6738 5' -57.8 NC_001875.2 + 94488 0.66 0.72307
Target:  5'- gUUC-GCACGAGCGcGCG-GCCgCGCgCAAa -3'
miRNA:   3'- -AAGuUGUGUUCGC-CGCaCGG-GCG-GUU- -5'
6738 5' -57.8 NC_001875.2 + 68390 0.66 0.72307
Target:  5'- -cCAACGCcucGCGGC-UGgCCGCCGAc -3'
miRNA:   3'- aaGUUGUGuu-CGCCGcACgGGCGGUU- -5'
6738 5' -57.8 NC_001875.2 + 62613 0.66 0.72307
Target:  5'- gUCGGCAC-AGCGcGCGUcGCCCGaaCAAg -3'
miRNA:   3'- aAGUUGUGuUCGC-CGCA-CGGGCg-GUU- -5'
6738 5' -57.8 NC_001875.2 + 98794 0.66 0.712885
Target:  5'- --gAACGCuaucgcGCGGCGcggcGCCCGCCGc -3'
miRNA:   3'- aagUUGUGuu----CGCCGCa---CGGGCGGUu -5'
6738 5' -57.8 NC_001875.2 + 110797 0.66 0.712885
Target:  5'- aUCGcCgACAAGgaaGGCGUGCCCGUgGAc -3'
miRNA:   3'- aAGUuG-UGUUCg--CCGCACGGGCGgUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.