miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6739 3' -57.4 NC_001875.2 + 18682 0.66 0.778338
Target:  5'- --cUGCUGGgcgaaacguacaaGGCGGCGc--UGGUGCAc -3'
miRNA:   3'- aacACGACC-------------UCGCCGCaacACCACGU- -5'
6739 3' -57.4 NC_001875.2 + 93968 0.66 0.763936
Target:  5'- ---cGCUGGcGCGGCccgccguuuuguaauGuUUGUGGUGCGc -3'
miRNA:   3'- aacaCGACCuCGCCG---------------C-AACACCACGU- -5'
6739 3' -57.4 NC_001875.2 + 13799 0.66 0.760048
Target:  5'- -cGUGCgggUGGcGCGGCGUUGccgucgcacUGGUcGCGg -3'
miRNA:   3'- aaCACG---ACCuCGCCGCAAC---------ACCA-CGU- -5'
6739 3' -57.4 NC_001875.2 + 91881 0.66 0.750246
Target:  5'- --cUGCUGGuGCGGCGgcggGUcGG-GCAa -3'
miRNA:   3'- aacACGACCuCGCCGCaa--CA-CCaCGU- -5'
6739 3' -57.4 NC_001875.2 + 116491 0.67 0.730325
Target:  5'- -aGUGCUGcacGCGGCGUUGUucGG-GCu -3'
miRNA:   3'- aaCACGACcu-CGCCGCAACA--CCaCGu -5'
6739 3' -57.4 NC_001875.2 + 104966 0.67 0.720227
Target:  5'- gUGUGC---GGCGGCGggcUGGUGCAc -3'
miRNA:   3'- aACACGaccUCGCCGCaacACCACGU- -5'
6739 3' -57.4 NC_001875.2 + 88134 0.68 0.668745
Target:  5'- -gGUGCU-GAGCGGCGccaaaauugUGUGG-GCGc -3'
miRNA:   3'- aaCACGAcCUCGCCGCa--------ACACCaCGU- -5'
6739 3' -57.4 NC_001875.2 + 34858 0.68 0.658317
Target:  5'- ---aGCUGGAGuCGaGCG-UGUGcGUGCAu -3'
miRNA:   3'- aacaCGACCUC-GC-CGCaACAC-CACGU- -5'
6739 3' -57.4 NC_001875.2 + 125331 0.68 0.637405
Target:  5'- --aUGUUGG-GCGGCGUUGUGGc--- -3'
miRNA:   3'- aacACGACCuCGCCGCAACACCacgu -5'
6739 3' -57.4 NC_001875.2 + 49348 0.69 0.574827
Target:  5'- ---aGCgUGG-GCGGCGggccGUGGUGCAa -3'
miRNA:   3'- aacaCG-ACCuCGCCGCaa--CACCACGU- -5'
6739 3' -57.4 NC_001875.2 + 826 0.71 0.474536
Target:  5'- --uUGCUGGuGGUGGgGcgGUGGUGCAg -3'
miRNA:   3'- aacACGACC-UCGCCgCaaCACCACGU- -5'
6739 3' -57.4 NC_001875.2 + 109098 0.78 0.176984
Target:  5'- aUGUGCUGGAGCGGUGc-GUGGccgGCGc -3'
miRNA:   3'- aACACGACCUCGCCGCaaCACCa--CGU- -5'
6739 3' -57.4 NC_001875.2 + 116865 1.06 0.00211
Target:  5'- gUUGUGCUGGAGCGGCGUUGUGGUGCAg -3'
miRNA:   3'- -AACACGACCUCGCCGCAACACCACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.