miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
674 3' -58 AC_000018.1 + 16047 0.66 0.429745
Target:  5'- -----aGaCGCCCGCGCCuaUGCuCGCc -3'
miRNA:   3'- gugaaaC-GCGGGCGCGGugACGuGCG- -5'
674 3' -58 AC_000018.1 + 21613 0.67 0.382572
Target:  5'- aGCU---CGCCUGCGCCauagucaacACUGCcggACGCg -3'
miRNA:   3'- gUGAaacGCGGGCGCGG---------UGACG---UGCG- -5'
674 3' -58 AC_000018.1 + 16844 0.67 0.347398
Target:  5'- aGCaagUGCuGCCCGUGCC--UGCGCGg -3'
miRNA:   3'- gUGaa-ACG-CGGGCGCGGugACGUGCg -5'
674 3' -58 AC_000018.1 + 10994 0.68 0.330698
Target:  5'- gGCgg-GCuGuCCCGCGCCGCUG-ACGg -3'
miRNA:   3'- gUGaaaCG-C-GGGCGCGGUGACgUGCg -5'
674 3' -58 AC_000018.1 + 11266 0.68 0.330698
Target:  5'- gGCgg-GCuGuCCCGCGCCGCUG-ACGg -3'
miRNA:   3'- gUGaaaCG-C-GGGCGCGGUGACgUGCg -5'
674 3' -58 AC_000018.1 + 9824 0.68 0.306771
Target:  5'- gCACUUcuucuuCGCCCGCucuGCCA-UGCAUGCg -3'
miRNA:   3'- -GUGAAac----GCGGGCG---CGGUgACGUGCG- -5'
674 3' -58 AC_000018.1 + 12979 0.68 0.299096
Target:  5'- aACUcc-CGCCUGCuGCUGCUGCugGUa -3'
miRNA:   3'- gUGAaacGCGGGCG-CGGUGACGugCG- -5'
674 3' -58 AC_000018.1 + 12104 0.71 0.195957
Target:  5'- uCGCUca--GCUCGCGCCucCUGCugGCg -3'
miRNA:   3'- -GUGAaacgCGGGCGCGGu-GACGugCG- -5'
674 3' -58 AC_000018.1 + 4538 0.72 0.170756
Target:  5'- aACgugUU-CGCCCGUGCCGCUGCccACGg -3'
miRNA:   3'- gUGa--AAcGCGGGCGCGGUGACG--UGCg -5'
674 3' -58 AC_000018.1 + 16269 0.76 0.085837
Target:  5'- -----cGCGCCUGCgggaccuGCCGCUGCugGCa -3'
miRNA:   3'- gugaaaCGCGGGCG-------CGGUGACGugCG- -5'
674 3' -58 AC_000018.1 + 16640 1.11 0.000178
Target:  5'- gCACUUUGCGCCCGCGCCACUGCACGCg -3'
miRNA:   3'- -GUGAAACGCGGGCGCGGUGACGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.