miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
674 5' -53.2 AC_000018.1 + 5059 0.66 0.744552
Target:  5'- cGGCucGAGCUCuuGCaACAGACUCUuuCCa -3'
miRNA:   3'- cCCG--CUUGAGcgCG-UGUUUGAGGu-GG- -5'
674 5' -53.2 AC_000018.1 + 10714 0.66 0.744552
Target:  5'- uGGCGAuuaauucuccagACUaCGgGCGCGAgccACUCCcaGCCc -3'
miRNA:   3'- cCCGCU------------UGA-GCgCGUGUU---UGAGG--UGG- -5'
674 5' -53.2 AC_000018.1 + 21369 0.66 0.744552
Target:  5'- aGGGUGGGCUCaucCAUggGaUCCACCu -3'
miRNA:   3'- -CCCGCUUGAGcgcGUGuuUgAGGUGG- -5'
674 5' -53.2 AC_000018.1 + 24317 0.66 0.733673
Target:  5'- aGGCGAaaagagguucaGCUCGUagGCGCGgcuaAGCUCUuCCa -3'
miRNA:   3'- cCCGCU-----------UGAGCG--CGUGU----UUGAGGuGG- -5'
674 5' -53.2 AC_000018.1 + 9216 0.66 0.722684
Target:  5'- cGGGgGAuUUCGaGCGCGAgguGCgcaCCACCa -3'
miRNA:   3'- -CCCgCUuGAGCgCGUGUU---UGa--GGUGG- -5'
674 5' -53.2 AC_000018.1 + 26006 0.66 0.700427
Target:  5'- uGGGgGAAcCUUGUGUugA-GCUCCucACCg -3'
miRNA:   3'- -CCCgCUU-GAGCGCGugUuUGAGG--UGG- -5'
674 5' -53.2 AC_000018.1 + 12729 0.67 0.650595
Target:  5'- uGGCGccgcgcuggaaccGCUCGCGCugAGACaCgGCCu -3'
miRNA:   3'- cCCGCu------------UGAGCGCGugUUUGaGgUGG- -5'
674 5' -53.2 AC_000018.1 + 13162 0.67 0.648314
Target:  5'- uGGGUGAuuucuugauaggucuGCUCGUcCACcuGGCUCUGCCc -3'
miRNA:   3'- -CCCGCU---------------UGAGCGcGUGu-UUGAGGUGG- -5'
674 5' -53.2 AC_000018.1 + 19485 0.67 0.64375
Target:  5'- aGGCGAAaaaGCGUcaGCAGcuuCUCUACCa -3'
miRNA:   3'- cCCGCUUgagCGCG--UGUUu--GAGGUGG- -5'
674 5' -53.2 AC_000018.1 + 6186 0.68 0.6369
Target:  5'- cGGCGAuguuaagcuggacguACUCGCGCGCcacacauUUCCAUUc -3'
miRNA:   3'- cCCGCU---------------UGAGCGCGUGuuu----GAGGUGG- -5'
674 5' -53.2 AC_000018.1 + 18207 0.68 0.632333
Target:  5'- uGGUGA---CGCGCGCAGACgagCCcCCu -3'
miRNA:   3'- cCCGCUugaGCGCGUGUUUGa--GGuGG- -5'
674 5' -53.2 AC_000018.1 + 8216 0.68 0.620917
Target:  5'- -uGCGcGCUCuCGUccuCGAGCUCCGCCc -3'
miRNA:   3'- ccCGCuUGAGcGCGu--GUUUGAGGUGG- -5'
674 5' -53.2 AC_000018.1 + 8153 0.68 0.586772
Target:  5'- gGGGCgGAGCUCgaggacgagaGCGCGCAGGCcggagcugUCCAg- -3'
miRNA:   3'- -CCCG-CUUGAG----------CGCGUGUUUG--------AGGUgg -5'
674 5' -53.2 AC_000018.1 + 25538 0.7 0.498141
Target:  5'- aGGCGAACagGUaGCAguGGCUCCAUa -3'
miRNA:   3'- cCCGCUUGagCG-CGUguUUGAGGUGg -5'
674 5' -53.2 AC_000018.1 + 11052 0.7 0.487454
Target:  5'- cGGGCGAuggUGCGCcCAGGCg-CGCCa -3'
miRNA:   3'- -CCCGCUugaGCGCGuGUUUGagGUGG- -5'
674 5' -53.2 AC_000018.1 + 11324 0.7 0.487454
Target:  5'- cGGGCGAuggUGCGCcCAGGCg-CGCCa -3'
miRNA:   3'- -CCCGCUugaGCGCGuGUUUGagGUGG- -5'
674 5' -53.2 AC_000018.1 + 16382 0.7 0.487454
Target:  5'- gGGGCGAG--UGCGCACGGGCaCgCGCUg -3'
miRNA:   3'- -CCCGCUUgaGCGCGUGUUUGaG-GUGG- -5'
674 5' -53.2 AC_000018.1 + 33587 0.7 0.487454
Target:  5'- aGGGUGAugUCugGCGCAUGAugUCgAgCg -3'
miRNA:   3'- -CCCGCUugAG--CGCGUGUUugAGgUgG- -5'
674 5' -53.2 AC_000018.1 + 8868 0.71 0.425812
Target:  5'- cGGGaucuCUCGCGCGCAuaa-CCACCu -3'
miRNA:   3'- -CCCgcuuGAGCGCGUGUuugaGGUGG- -5'
674 5' -53.2 AC_000018.1 + 16105 0.71 0.425812
Target:  5'- cGGCGAGCauaggCGCGgGCGucugCCACCa -3'
miRNA:   3'- cCCGCUUGa----GCGCgUGUuugaGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.