miRNA display CGI


Results 41 - 60 of 399 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6741 3' -63.9 NC_001875.2 + 65772 0.8 0.069493
Target:  5'- gCGCGG-CGgGCGGCGGCGCGucgucguugAgCGCCa -3'
miRNA:   3'- -GCGCCaGCgCGCCGCCGCGU---------UgGCGG- -5'
6741 3' -63.9 NC_001875.2 + 39182 0.81 0.066046
Target:  5'- gGCGGUUGCGUGGCGuuuacgguGCGCcgcuacAACCGCCa -3'
miRNA:   3'- gCGCCAGCGCGCCGC--------CGCG------UUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 17333 0.81 0.05964
Target:  5'- gGCGGUUGCGCcGCcGCGCGACCGCg -3'
miRNA:   3'- gCGCCAGCGCGcCGcCGCGUUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 10868 0.83 0.047351
Target:  5'- aCGCGGUggcCGCGuCGGUGGCGCuGCCGCg -3'
miRNA:   3'- -GCGCCA---GCGC-GCCGCCGCGuUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 68569 0.84 0.040569
Target:  5'- gGCGGUCGCGCaccgcGUGGCGCcgcuGGCCGCCg -3'
miRNA:   3'- gCGCCAGCGCGc----CGCCGCG----UUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 110735 0.76 0.139837
Target:  5'- aCGCGGggCGCGUGcaguuuaagcGCGGCGaCcGCCGCCg -3'
miRNA:   3'- -GCGCCa-GCGCGC----------CGCCGC-GuUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 131511 0.76 0.148255
Target:  5'- uGCGG-CGCGCGGUgcagcggcuggaagcGGCGCAaaGCgCGCCc -3'
miRNA:   3'- gCGCCaGCGCGCCG---------------CCGCGU--UG-GCGG- -5'
6741 3' -63.9 NC_001875.2 + 42699 0.73 0.205173
Target:  5'- gCGCGG-CGCGCGGUuucguacgcaaGGCGCAcCCGgUCg -3'
miRNA:   3'- -GCGCCaGCGCGCCG-----------CCGCGUuGGC-GG- -5'
6741 3' -63.9 NC_001875.2 + 36876 0.73 0.205173
Target:  5'- aCGUcGUCGUGCGcGCGGCaC-ACCGCCg -3'
miRNA:   3'- -GCGcCAGCGCGC-CGCCGcGuUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 109996 0.74 0.200412
Target:  5'- gCGCGGUCG-GUGGCGuugacgcgcGCGCAGCuCGaCCa -3'
miRNA:   3'- -GCGCCAGCgCGCCGC---------CGCGUUG-GC-GG- -5'
6741 3' -63.9 NC_001875.2 + 88244 0.74 0.200412
Target:  5'- aGCGG-CGCGCGcCGcCGCuGCCGCCg -3'
miRNA:   3'- gCGCCaGCGCGCcGCcGCGuUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 29292 0.74 0.200412
Target:  5'- gCGCGGUCGUGUGGCG-UGuCGugCGCg -3'
miRNA:   3'- -GCGCCAGCGCGCCGCcGC-GUugGCGg -5'
6741 3' -63.9 NC_001875.2 + 37599 0.74 0.195747
Target:  5'- cCGCGGccggcCGCaCGGCGGCGUGcUCGCCg -3'
miRNA:   3'- -GCGCCa----GCGcGCCGCCGCGUuGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 29259 0.74 0.191178
Target:  5'- uGCGGgUGCGCGGCcGC-CGACCGCg -3'
miRNA:   3'- gCGCCaGCGCGCCGcCGcGUUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 85289 0.74 0.191178
Target:  5'- -aCGGuUUGCGCgGGCGGCGCGGgCGCg -3'
miRNA:   3'- gcGCC-AGCGCG-CCGCCGCGUUgGCGg -5'
6741 3' -63.9 NC_001875.2 + 100597 0.74 0.186702
Target:  5'- aCGCGGgcCGgGCGcCGGcCGCGGCCGCUg -3'
miRNA:   3'- -GCGCCa-GCgCGCcGCC-GCGUUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 36578 0.74 0.182319
Target:  5'- gCGCGGcUGuUGCaaaauGCGGCGCAGCCGCUg -3'
miRNA:   3'- -GCGCCaGC-GCGc----CGCCGCGUUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 18148 0.74 0.182319
Target:  5'- uGUGaGUUacugGUGCGGCGcGCGCGacGCCGCCa -3'
miRNA:   3'- gCGC-CAG----CGCGCCGC-CGCGU--UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 47902 0.75 0.169713
Target:  5'- aGU--UCGCGCGGUGGUGCuGCCGCa -3'
miRNA:   3'- gCGccAGCGCGCCGCCGCGuUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 50023 0.75 0.15043
Target:  5'- gCGUGGUCGcCG-GGCGGCGaGGCgGCCg -3'
miRNA:   3'- -GCGCCAGC-GCgCCGCCGCgUUGgCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.