miRNA display CGI


Results 41 - 60 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6741 3' -63.9 NC_001875.2 + 130656 0.66 0.547211
Target:  5'- uGCGGUUcaGCGUGGCaaaguGcCGCGACgaCGCCu -3'
miRNA:   3'- gCGCCAG--CGCGCCGc----C-GCGUUG--GCGG- -5'
6741 3' -63.9 NC_001875.2 + 113085 0.66 0.547211
Target:  5'- gGCGa-CGCGCGuCaGCGCcuuAGCCGCCg -3'
miRNA:   3'- gCGCcaGCGCGCcGcCGCG---UUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 110279 0.66 0.547211
Target:  5'- cCGCGGagCGCGCgGGCuGCcCcgUCGCCg -3'
miRNA:   3'- -GCGCCa-GCGCG-CCGcCGcGuuGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 114330 0.66 0.544378
Target:  5'- gGCGGUCuaGgGuguuagcaaacgacGCGGCGU--CCGCCa -3'
miRNA:   3'- gCGCCAGcgCgC--------------CGCCGCGuuGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 92495 0.66 0.538725
Target:  5'- gGCGGgcgucagcgucaggcUGCGCcugcaGCGcGCGCAcGCCGCCg -3'
miRNA:   3'- gCGCCa--------------GCGCGc----CGC-CGCGU-UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 22585 0.66 0.537784
Target:  5'- gCGCGG-CGCGuUGGcCGGC-CGGCUGUa -3'
miRNA:   3'- -GCGCCaGCGC-GCC-GCCGcGUUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 97735 0.66 0.537784
Target:  5'- cCGCGaG-CGCGCGcGCucGUGCAACC-CCg -3'
miRNA:   3'- -GCGC-CaGCGCGC-CGc-CGCGUUGGcGG- -5'
6741 3' -63.9 NC_001875.2 + 114029 0.66 0.537784
Target:  5'- gGCGGcCGCGCGGUccagauGGUaGCAcgcggGCUGCg -3'
miRNA:   3'- gCGCCaGCGCGCCG------CCG-CGU-----UGGCGg -5'
6741 3' -63.9 NC_001875.2 + 43105 0.66 0.537784
Target:  5'- cCGCaGUUuuGCGGCaGGuUGgAGCCGCCg -3'
miRNA:   3'- -GCGcCAGcgCGCCG-CC-GCgUUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 30735 0.66 0.537784
Target:  5'- aGCGGU-GCGuCaGCGGCGaccCCGCUu -3'
miRNA:   3'- gCGCCAgCGC-GcCGCCGCguuGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 95430 0.66 0.537784
Target:  5'- cCGCGG-CGC-CGGCcagcguGCGCGGCUGgCa -3'
miRNA:   3'- -GCGCCaGCGcGCCGc-----CGCGUUGGCgG- -5'
6741 3' -63.9 NC_001875.2 + 33563 0.66 0.537784
Target:  5'- uGCGGUCGcCGCGG-GGCacCAugC-CCg -3'
miRNA:   3'- gCGCCAGC-GCGCCgCCGc-GUugGcGG- -5'
6741 3' -63.9 NC_001875.2 + 62386 0.66 0.537784
Target:  5'- aCGuuGUUuaGCGUGGcCGGCGCGcaaaCGCCg -3'
miRNA:   3'- -GCgcCAG--CGCGCC-GCCGCGUug--GCGG- -5'
6741 3' -63.9 NC_001875.2 + 118303 0.66 0.537784
Target:  5'- aCGCcgacagGGUCGa--GGCGGC-CGGCCGCg -3'
miRNA:   3'- -GCG------CCAGCgcgCCGCCGcGUUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 76449 0.66 0.528414
Target:  5'- uCGgGGggCGCGCuGGCGGCcCAcucaaugaGCUGCUg -3'
miRNA:   3'- -GCgCCa-GCGCG-CCGCCGcGU--------UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 75255 0.66 0.528414
Target:  5'- gGCGG-CGUcggcgaugGCGGCGGCGuCGGCgauggCGUCg -3'
miRNA:   3'- gCGCCaGCG--------CGCCGCCGC-GUUG-----GCGG- -5'
6741 3' -63.9 NC_001875.2 + 45634 0.66 0.528414
Target:  5'- cCGCaaGUUGUGCGGCGGCGCcucuaguuUUGCg -3'
miRNA:   3'- -GCGc-CAGCGCGCCGCCGCGuu------GGCGg -5'
6741 3' -63.9 NC_001875.2 + 2295 0.66 0.528414
Target:  5'- gCGCGcG-CGcCGUGGcCGcGCGCAGCUcgGCCa -3'
miRNA:   3'- -GCGC-CaGC-GCGCC-GC-CGCGUUGG--CGG- -5'
6741 3' -63.9 NC_001875.2 + 69363 0.66 0.528414
Target:  5'- aGCGG-CGUGCGcccGCuGCGC-GCCGUCc -3'
miRNA:   3'- gCGCCaGCGCGC---CGcCGCGuUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 11877 0.66 0.528414
Target:  5'- uGCGGUgUGCGCGGCGaCGgAGgggUCGUCg -3'
miRNA:   3'- gCGCCA-GCGCGCCGCcGCgUU---GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.