Results 41 - 60 of 64 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6742 | 5' | -55.9 | NC_001875.2 | + | 92512 | 0.66 | 0.856828 |
Target: 5'- -gGCUGCGccugcagcgcgcgcACGCCGCCGgcacgGUgUGCAGc -3' miRNA: 3'- caUGACGU--------------UGCGGCGGCa----CAgGUGUU- -5' |
|||||||
6742 | 5' | -55.9 | NC_001875.2 | + | 94236 | 0.67 | 0.789876 |
Target: 5'- -gGCgaGC-ACGCCGCCGUGcggccggCCGCGg -3' miRNA: 3'- caUGa-CGuUGCGGCGGCACa------GGUGUu -5' |
|||||||
6742 | 5' | -55.9 | NC_001875.2 | + | 94470 | 0.69 | 0.6696 |
Target: 5'- -aACUGCAGCGgCGCgCGcGUUCGCAc -3' miRNA: 3'- caUGACGUUGCgGCG-GCaCAGGUGUu -5' |
|||||||
6742 | 5' | -55.9 | NC_001875.2 | + | 95730 | 0.67 | 0.789876 |
Target: 5'- aGUGCaugaGCGGCGCCGCCGccgcgugcUG-CCGCGc -3' miRNA: 3'- -CAUGa---CGUUGCGGCGGC--------ACaGGUGUu -5' |
|||||||
6742 | 5' | -55.9 | NC_001875.2 | + | 96757 | 0.66 | 0.866975 |
Target: 5'- cGUACU-UGACGCCGUCGaUGcggCCGCAAa -3' miRNA: 3'- -CAUGAcGUUGCGGCGGC-ACa--GGUGUU- -5' |
|||||||
6742 | 5' | -55.9 | NC_001875.2 | + | 99320 | 0.7 | 0.638152 |
Target: 5'- -gGCUGCGcagcaacguuGCGCgaagCGUCGUGUCCGCGc -3' miRNA: 3'- caUGACGU----------UGCG----GCGGCACAGGUGUu -5' |
|||||||
6742 | 5' | -55.9 | NC_001875.2 | + | 99841 | 0.69 | 0.721243 |
Target: 5'- -cGCUGCGuCGCCGCCGc--UCACAAa -3' miRNA: 3'- caUGACGUuGCGGCGGCacaGGUGUU- -5' |
|||||||
6742 | 5' | -55.9 | NC_001875.2 | + | 102770 | 0.67 | 0.789876 |
Target: 5'- -cGCUGCAGCGCUucaaaacuGCCGgaaugGUCUugAGc -3' miRNA: 3'- caUGACGUUGCGG--------CGGCa----CAGGugUU- -5' |
|||||||
6742 | 5' | -55.9 | NC_001875.2 | + | 103172 | 0.67 | 0.789876 |
Target: 5'- cGUACgccaugucGCccACGCCGCCGU-UCCACAc -3' miRNA: 3'- -CAUGa-------CGu-UGCGGCGGCAcAGGUGUu -5' |
|||||||
6742 | 5' | -55.9 | NC_001875.2 | + | 108653 | 0.76 | 0.319558 |
Target: 5'- cUACUGCAAcCGCCaacgGCCGUGcCCGCAGc -3' miRNA: 3'- cAUGACGUU-GCGG----CGGCACaGGUGUU- -5' |
|||||||
6742 | 5' | -55.9 | NC_001875.2 | + | 112709 | 0.72 | 0.504059 |
Target: 5'- -cGCUGaCGGCGCCGCCGUGguaggcgcgUCGCGc -3' miRNA: 3'- caUGAC-GUUGCGGCGGCACa--------GGUGUu -5' |
|||||||
6742 | 5' | -55.9 | NC_001875.2 | + | 114075 | 1.06 | 0.003358 |
Target: 5'- uGUACUGCAACGCCGCCGUGUCCACAAg -3' miRNA: 3'- -CAUGACGUUGCGGCGGCACAGGUGUU- -5' |
|||||||
6742 | 5' | -55.9 | NC_001875.2 | + | 116577 | 0.67 | 0.817242 |
Target: 5'- ----aGCAccACGCCGCCGgugGUgCGCAGc -3' miRNA: 3'- caugaCGU--UGCGGCGGCa--CAgGUGUU- -5' |
|||||||
6742 | 5' | -55.9 | NC_001875.2 | + | 117931 | 0.67 | 0.808285 |
Target: 5'- -aGCUGCAggccggcgugcGCGCCGCCGcguuugguuugGUCgACGAc -3' miRNA: 3'- caUGACGU-----------UGCGGCGGCa----------CAGgUGUU- -5' |
|||||||
6742 | 5' | -55.9 | NC_001875.2 | + | 118036 | 0.67 | 0.817242 |
Target: 5'- aGUGCgacgGCAACGCCGCgccacccgcaCGauUGUCCgACAAc -3' miRNA: 3'- -CAUGa---CGUUGCGGCG----------GC--ACAGG-UGUU- -5' |
|||||||
6742 | 5' | -55.9 | NC_001875.2 | + | 118590 | 0.74 | 0.409683 |
Target: 5'- -gACcGCGGCGCCGCCGUGUUUAa-- -3' miRNA: 3'- caUGaCGUUGCGGCGGCACAGGUguu -5' |
|||||||
6742 | 5' | -55.9 | NC_001875.2 | + | 118662 | 0.71 | 0.564979 |
Target: 5'- -cGCUGCGucagaACGCuCGCCGUGUUCGgCGAc -3' miRNA: 3'- caUGACGU-----UGCG-GCGGCACAGGU-GUU- -5' |
|||||||
6742 | 5' | -55.9 | NC_001875.2 | + | 119887 | 0.72 | 0.544407 |
Target: 5'- --uCUGCAacGCGCCGCCG-GUCgCGCGc -3' miRNA: 3'- cauGACGU--UGCGGCGGCaCAG-GUGUu -5' |
|||||||
6742 | 5' | -55.9 | NC_001875.2 | + | 120740 | 0.79 | 0.20052 |
Target: 5'- -aGCUGCGGCGCCgagacgggGCCGUGUCCAgGg -3' miRNA: 3'- caUGACGUUGCGG--------CGGCACAGGUgUu -5' |
|||||||
6742 | 5' | -55.9 | NC_001875.2 | + | 121385 | 0.66 | 0.834616 |
Target: 5'- -cACUGagcGCGCCGCCGcG-CCGCGu -3' miRNA: 3'- caUGACgu-UGCGGCGGCaCaGGUGUu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home