Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6742 | 5' | -55.9 | NC_001875.2 | + | 127975 | 0.7 | 0.627648 |
Target: 5'- -gGCggcGCggUGCUGCCGUG-CCACAc -3' miRNA: 3'- caUGa--CGuuGCGGCGGCACaGGUGUu -5' |
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6742 | 5' | -55.9 | NC_001875.2 | + | 128008 | 0.68 | 0.761164 |
Target: 5'- -gGCUGCGgccGCGCCGgCGUGcgCCgACGAc -3' miRNA: 3'- caUGACGU---UGCGGCgGCACa-GG-UGUU- -5' |
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6742 | 5' | -55.9 | NC_001875.2 | + | 129169 | 0.68 | 0.770869 |
Target: 5'- -cGCcGCAguugccccagGCGCCGCCGgcgCCGCAAg -3' miRNA: 3'- caUGaCGU----------UGCGGCGGCacaGGUGUU- -5' |
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6742 | 5' | -55.9 | NC_001875.2 | + | 130702 | 0.68 | 0.741405 |
Target: 5'- -cGCuUGC-AUGUaCGCCGUGUCCGCGu -3' miRNA: 3'- caUG-ACGuUGCG-GCGGCACAGGUGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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