miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6742 5' -55.9 NC_001875.2 + 121385 0.66 0.834616
Target:  5'- -cACUGagcGCGCCGCCGcG-CCGCGu -3'
miRNA:   3'- caUGACgu-UGCGGCGGCaCaGGUGUu -5'
6742 5' -55.9 NC_001875.2 + 44970 0.67 0.826022
Target:  5'- aGUGCUGCAGCaCCGUCGacGUCaGCAGc -3'
miRNA:   3'- -CAUGACGUUGcGGCGGCa-CAGgUGUU- -5'
6742 5' -55.9 NC_001875.2 + 44135 0.67 0.817242
Target:  5'- uUGCguccGCGgaGCGCUuuCCGUGUCCGCAAa -3'
miRNA:   3'- cAUGa---CGU--UGCGGc-GGCACAGGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 116577 0.67 0.817242
Target:  5'- ----aGCAccACGCCGCCGgugGUgCGCAGc -3'
miRNA:   3'- caugaCGU--UGCGGCGGCa--CAgGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 118036 0.67 0.817242
Target:  5'- aGUGCgacgGCAACGCCGCgccacccgcaCGauUGUCCgACAAc -3'
miRNA:   3'- -CAUGa---CGUUGCGGCG----------GC--ACAGG-UGUU- -5'
6742 5' -55.9 NC_001875.2 + 34423 0.67 0.808285
Target:  5'- cGUAC-GCGGuCGCCGCCGcGaCCAUAAu -3'
miRNA:   3'- -CAUGaCGUU-GCGGCGGCaCaGGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 117931 0.67 0.808285
Target:  5'- -aGCUGCAggccggcgugcGCGCCGCCGcguuugguuugGUCgACGAc -3'
miRNA:   3'- caUGACGU-----------UGCGGCGGCa----------CAGgUGUU- -5'
6742 5' -55.9 NC_001875.2 + 70342 0.67 0.799161
Target:  5'- -gACUGCGGCGCCgaGCCGg--CgCGCAAa -3'
miRNA:   3'- caUGACGUUGCGG--CGGCacaG-GUGUU- -5'
6742 5' -55.9 NC_001875.2 + 12293 0.67 0.799161
Target:  5'- uGUGCagccgGC-ACGCCGCCGUGUgCGu-- -3'
miRNA:   3'- -CAUGa----CGuUGCGGCGGCACAgGUguu -5'
6742 5' -55.9 NC_001875.2 + 5046 0.67 0.799161
Target:  5'- -gGCUGCAAaGCCGCCGcagcuUGcacagCCGCAGu -3'
miRNA:   3'- caUGACGUUgCGGCGGC-----ACa----GGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 94236 0.67 0.789876
Target:  5'- -gGCgaGC-ACGCCGCCGUGcggccggCCGCGg -3'
miRNA:   3'- caUGa-CGuUGCGGCGGCACa------GGUGUu -5'
6742 5' -55.9 NC_001875.2 + 102770 0.67 0.789876
Target:  5'- -cGCUGCAGCGCUucaaaacuGCCGgaaugGUCUugAGc -3'
miRNA:   3'- caUGACGUUGCGG--------CGGCa----CAGGugUU- -5'
6742 5' -55.9 NC_001875.2 + 95730 0.67 0.789876
Target:  5'- aGUGCaugaGCGGCGCCGCCGccgcgugcUG-CCGCGc -3'
miRNA:   3'- -CAUGa---CGUUGCGGCGGC--------ACaGGUGUu -5'
6742 5' -55.9 NC_001875.2 + 103172 0.67 0.789876
Target:  5'- cGUACgccaugucGCccACGCCGCCGU-UCCACAc -3'
miRNA:   3'- -CAUGa-------CGu-UGCGGCGGCAcAGGUGUu -5'
6742 5' -55.9 NC_001875.2 + 129169 0.68 0.770869
Target:  5'- -cGCcGCAguugccccagGCGCCGCCGgcgCCGCAAg -3'
miRNA:   3'- caUGaCGU----------UGCGGCGGCacaGGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 1717 0.68 0.765061
Target:  5'- aUGCUGCGggcgcgacaccggucGCGCCGCCGccgCCGCc- -3'
miRNA:   3'- cAUGACGU---------------UGCGGCGGCacaGGUGuu -5'
6742 5' -55.9 NC_001875.2 + 5823 0.68 0.761164
Target:  5'- -gACUGcCAGCGCCGCCGaucUGgacgcgcCCGCGu -3'
miRNA:   3'- caUGAC-GUUGCGGCGGC---ACa------GGUGUu -5'
6742 5' -55.9 NC_001875.2 + 42487 0.68 0.761164
Target:  5'- -cGC-GCAcGCGCaCGCCGUcGUCCGCGu -3'
miRNA:   3'- caUGaCGU-UGCG-GCGGCA-CAGGUGUu -5'
6742 5' -55.9 NC_001875.2 + 128008 0.68 0.761164
Target:  5'- -gGCUGCGgccGCGCCGgCGUGcgCCgACGAc -3'
miRNA:   3'- caUGACGU---UGCGGCgGCACa-GG-UGUU- -5'
6742 5' -55.9 NC_001875.2 + 86602 0.68 0.75134
Target:  5'- uGUACgacaagGCGacGCGCCGCC-UGUUCGCGc -3'
miRNA:   3'- -CAUGa-----CGU--UGCGGCGGcACAGGUGUu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.