miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6743 5' -50.4 NC_001875.2 + 92464 0.66 0.993924
Target:  5'- gGCACgAGUGGC-CGCAG-GGUag-GCa -3'
miRNA:   3'- -CGUGgUCAUUGaGUGUCaCCGcaaCG- -5'
6743 5' -50.4 NC_001875.2 + 28823 0.66 0.993924
Target:  5'- -aGCCGGUGACcgUCAgGGUGGCc---- -3'
miRNA:   3'- cgUGGUCAUUG--AGUgUCACCGcaacg -5'
6743 5' -50.4 NC_001875.2 + 65575 0.66 0.992963
Target:  5'- cGUGCCAGaagAGCUUguccCAGuUGGCGgcGCa -3'
miRNA:   3'- -CGUGGUCa--UUGAGu---GUC-ACCGCaaCG- -5'
6743 5' -50.4 NC_001875.2 + 2447 0.66 0.992963
Target:  5'- aGCuCCAcGUAACcgUCGCGGUuguaGGCGcgGCa -3'
miRNA:   3'- -CGuGGU-CAUUG--AGUGUCA----CCGCaaCG- -5'
6743 5' -50.4 NC_001875.2 + 72560 0.66 0.99233
Target:  5'- cGCugCGGgcGCgggCGCGGgcgcugcgggugcgGGCGcUGCg -3'
miRNA:   3'- -CGugGUCauUGa--GUGUCa-------------CCGCaACG- -5'
6743 5' -50.4 NC_001875.2 + 47600 0.66 0.991884
Target:  5'- uCGCCGGcGcgcguuugccGCUCaACAGUGGCGUa-- -3'
miRNA:   3'- cGUGGUCaU----------UGAG-UGUCACCGCAacg -5'
6743 5' -50.4 NC_001875.2 + 130834 0.66 0.991884
Target:  5'- cGCugCAagAACgggccCGCAGcaaUGGCGUUGUg -3'
miRNA:   3'- -CGugGUcaUUGa----GUGUC---ACCGCAACG- -5'
6743 5' -50.4 NC_001875.2 + 114890 0.66 0.991884
Target:  5'- aGCGCUGGUuGgUCAC-GUGGCGcaacGCg -3'
miRNA:   3'- -CGUGGUCAuUgAGUGuCACCGCaa--CG- -5'
6743 5' -50.4 NC_001875.2 + 91164 0.66 0.990677
Target:  5'- uGCGCCGcGUcAUggucCACAGcGGCGcUUGCg -3'
miRNA:   3'- -CGUGGU-CAuUGa---GUGUCaCCGC-AACG- -5'
6743 5' -50.4 NC_001875.2 + 105998 0.66 0.989334
Target:  5'- uGCGCCAuGgccccGACuUCAUcugGGCGUUGCa -3'
miRNA:   3'- -CGUGGU-Ca----UUG-AGUGucaCCGCAACG- -5'
6743 5' -50.4 NC_001875.2 + 110155 0.66 0.989334
Target:  5'- aGCACCGcGUcgcGCUCGuCGGgcGGCGUcGCa -3'
miRNA:   3'- -CGUGGU-CAu--UGAGU-GUCa-CCGCAaCG- -5'
6743 5' -50.4 NC_001875.2 + 3101 0.66 0.989334
Target:  5'- cGCGCCGGggcgcGGCUCGCGGcgcagaccugGGCG--GCg -3'
miRNA:   3'- -CGUGGUCa----UUGAGUGUCa---------CCGCaaCG- -5'
6743 5' -50.4 NC_001875.2 + 84361 0.66 0.989334
Target:  5'- uGCGCCGGUAGgUgCGCGGccugccggGGCGgcGUc -3'
miRNA:   3'- -CGUGGUCAUUgA-GUGUCa-------CCGCaaCG- -5'
6743 5' -50.4 NC_001875.2 + 86210 0.66 0.989334
Target:  5'- gGCGCCGccgcacAACUUGCGGcUGGUGUUGg -3'
miRNA:   3'- -CGUGGUca----UUGAGUGUC-ACCGCAACg -5'
6743 5' -50.4 NC_001875.2 + 111207 0.66 0.989334
Target:  5'- cGCGCCGuuuuuuGUuGCUCACg--GGCGUggGCa -3'
miRNA:   3'- -CGUGGU------CAuUGAGUGucaCCGCAa-CG- -5'
6743 5' -50.4 NC_001875.2 + 42739 0.66 0.989334
Target:  5'- cGCGCgCGGcGACgcgCAUGGUGaGCGgcGCg -3'
miRNA:   3'- -CGUG-GUCaUUGa--GUGUCAC-CGCaaCG- -5'
6743 5' -50.4 NC_001875.2 + 118288 0.67 0.987845
Target:  5'- cGCAagAGUGGCU-GCAGcUGGCGcgcUUGCa -3'
miRNA:   3'- -CGUggUCAUUGAgUGUC-ACCGC---AACG- -5'
6743 5' -50.4 NC_001875.2 + 29280 0.67 0.987845
Target:  5'- cGCGCCGGcGGggCGCGgucguGUGGCGUgucgUGCg -3'
miRNA:   3'- -CGUGGUCaUUgaGUGU-----CACCGCA----ACG- -5'
6743 5' -50.4 NC_001875.2 + 128306 0.67 0.987529
Target:  5'- gGCGCCGGUGACgugcgccaaaugCGCAaaaacaauggGGCGUcGCa -3'
miRNA:   3'- -CGUGGUCAUUGa-----------GUGUca--------CCGCAaCG- -5'
6743 5' -50.4 NC_001875.2 + 125305 0.67 0.9862
Target:  5'- cGCGCCgcaAGUugguaaagaAACUCAUguugGGcGGCGUUGUg -3'
miRNA:   3'- -CGUGG---UCA---------UUGAGUG----UCaCCGCAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.