Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6744 | 3' | -52.8 | NC_001875.2 | + | 4989 | 0.66 | 0.951039 |
Target: 5'- -aGCGCCUcgcUGCUgugcggcacuugUGCAcuuugcGCCGCCUc -3' miRNA: 3'- gaCGCGGAa--ACGA------------ACGUua----UGGCGGA- -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 5054 | 0.66 | 0.955227 |
Target: 5'- -aGcCGCCgcaGCUUGCAcaGCCGCa- -3' miRNA: 3'- gaC-GCGGaaaCGAACGUuaUGGCGga -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 7349 | 0.68 | 0.901667 |
Target: 5'- aUGCaCCUUguagccUGCggUGCAGUGcCCGCCg -3' miRNA: 3'- gACGcGGAA------ACGa-ACGUUAU-GGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 9083 | 0.67 | 0.908199 |
Target: 5'- aCUGCGCCUgugGCgagucgGCGcUAaaccCCGCCa -3' miRNA: 3'- -GACGCGGAaa-CGaa----CGUuAU----GGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 11040 | 0.67 | 0.914472 |
Target: 5'- gCUGCGCCguuugcGCUUGUugGAUACCaGCg- -3' miRNA: 3'- -GACGCGGaaa---CGAACG--UUAUGG-CGga -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 12161 | 0.67 | 0.936939 |
Target: 5'- -aGCGCUUUcgGCUgaagccgcugUGCGccGCCGCCg -3' miRNA: 3'- gaCGCGGAAa-CGA----------ACGUuaUGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 17307 | 0.66 | 0.95801 |
Target: 5'- -aGCGCCgccgauguuaaagaGCUgcugGCGGUugCGCCg -3' miRNA: 3'- gaCGCGGaaa-----------CGAa---CGUUAugGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 18698 | 0.67 | 0.936429 |
Target: 5'- -cGCGCCg--GCgUGCAcauuaacGUGCCGCa- -3' miRNA: 3'- gaCGCGGaaaCGaACGU-------UAUGGCGga -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 21355 | 0.67 | 0.926233 |
Target: 5'- -aGCGCCgugUGCUUgacGCGGUACUugcgguugGCCUu -3' miRNA: 3'- gaCGCGGaa-ACGAA---CGUUAUGG--------CGGA- -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 29240 | 0.67 | 0.914472 |
Target: 5'- -cGCGgCUUccguggcauacUGCgggUGCGcgGCCGCCg -3' miRNA: 3'- gaCGCgGAA-----------ACGa--ACGUuaUGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 29538 | 0.7 | 0.814009 |
Target: 5'- uCUGCGCCUU--CUUGCG--GCgCGCCa -3' miRNA: 3'- -GACGCGGAAacGAACGUuaUG-GCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 31316 | 0.66 | 0.955227 |
Target: 5'- cCUGuCGCUg--GCggUGCAAcaaaaauuUGCCGCCg -3' miRNA: 3'- -GAC-GCGGaaaCGa-ACGUU--------AUGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 31675 | 0.67 | 0.920484 |
Target: 5'- aCUGgGCCagcgUGCcgGCGuggACCGCCg -3' miRNA: 3'- -GACgCGGaa--ACGaaCGUua-UGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 34807 | 0.66 | 0.955227 |
Target: 5'- gUGCGCCg--GCaaGCGuuuacgacgcUGCCGCCg -3' miRNA: 3'- gACGCGGaaaCGaaCGUu---------AUGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 39935 | 0.69 | 0.857234 |
Target: 5'- cCUGCGCgcaaUUUGCgcGCGGUugcccgacccGCCGCCg -3' miRNA: 3'- -GACGCGg---AAACGaaCGUUA----------UGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 41782 | 0.73 | 0.640758 |
Target: 5'- cCUGaCGCCcaUGCUUGUGAUuuCCGCCg -3' miRNA: 3'- -GAC-GCGGaaACGAACGUUAu-GGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 45111 | 0.66 | 0.959165 |
Target: 5'- -cGCGCCUUcaugUGCgacgaGCAGUGuCgGCCg -3' miRNA: 3'- gaCGCGGAA----ACGaa---CGUUAU-GgCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 50149 | 0.71 | 0.76625 |
Target: 5'- -aGCGCCUggcGCgccuucUGCAugGCCGCCUc -3' miRNA: 3'- gaCGCGGAaa-CGa-----ACGUuaUGGCGGA- -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 51896 | 0.68 | 0.87301 |
Target: 5'- -cGUGCCUgaacgGCgugaacgagGUGAUGCCGCCg -3' miRNA: 3'- gaCGCGGAaa---CGaa-------CGUUAUGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 52302 | 0.68 | 0.894877 |
Target: 5'- gCUG-GCCUUUGCgcugugGCGcAUACaCGCCa -3' miRNA: 3'- -GACgCGGAAACGaa----CGU-UAUG-GCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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