Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6744 | 3' | -52.8 | NC_001875.2 | + | 9083 | 0.67 | 0.908199 |
Target: 5'- aCUGCGCCUgugGCgagucgGCGcUAaaccCCGCCa -3' miRNA: 3'- -GACGCGGAaa-CGaa----CGUuAU----GGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 11040 | 0.67 | 0.914472 |
Target: 5'- gCUGCGCCguuugcGCUUGUugGAUACCaGCg- -3' miRNA: 3'- -GACGCGGaaa---CGAACG--UUAUGG-CGga -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 87393 | 0.67 | 0.914472 |
Target: 5'- aCUGCGCCgacggcgccUUGCUgaucGCGuucaacgACCGCCc -3' miRNA: 3'- -GACGCGGa--------AACGAa---CGUua-----UGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 21355 | 0.67 | 0.926233 |
Target: 5'- -aGCGCCgugUGCUUgacGCGGUACUugcgguugGCCUu -3' miRNA: 3'- gaCGCGGaa-ACGAA---CGUUAUGG--------CGGA- -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 85602 | 0.67 | 0.931717 |
Target: 5'- -aGCGCCUccaccaacgcGCUUGUGAUaucguucgcagcGCCGCCa -3' miRNA: 3'- gaCGCGGAaa--------CGAACGUUA------------UGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 118804 | 0.67 | 0.936429 |
Target: 5'- -aGCGCUuaUUUGCgcgcuuuUUGCAAaGCUGCCg -3' miRNA: 3'- gaCGCGG--AAACG-------AACGUUaUGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 91682 | 0.67 | 0.936939 |
Target: 5'- aUGCGCaucgcgUUGCcggccgUGCGGUGCCaGCCc -3' miRNA: 3'- gACGCGga----AACGa-----ACGUUAUGG-CGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 4989 | 0.66 | 0.951039 |
Target: 5'- -aGCGCCUcgcUGCUgugcggcacuugUGCAcuuugcGCCGCCUc -3' miRNA: 3'- gaCGCGGAa--ACGA------------ACGUua----UGGCGGA- -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 5054 | 0.66 | 0.955227 |
Target: 5'- -aGcCGCCgcaGCUUGCAcaGCCGCa- -3' miRNA: 3'- gaC-GCGGaaaCGAACGUuaUGGCGga -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 75497 | 0.68 | 0.901667 |
Target: 5'- -cGCGCCUgcgucGCagGCGcAUACCGCUg -3' miRNA: 3'- gaCGCGGAaa---CGaaCGU-UAUGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 114721 | 0.68 | 0.894877 |
Target: 5'- -cGaCGCCaaaUGCUUGCuuaugcgGCCGCCa -3' miRNA: 3'- gaC-GCGGaa-ACGAACGuua----UGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 119874 | 0.68 | 0.894877 |
Target: 5'- -cGuCGCCagUGCUucUGCAAcgcGCCGCCg -3' miRNA: 3'- gaC-GCGGaaACGA--ACGUUa--UGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 121174 | 0.74 | 0.565889 |
Target: 5'- -aGCGCCUgcGCcaagUGCAGUccGCCGCCc -3' miRNA: 3'- gaCGCGGAaaCGa---ACGUUA--UGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 92513 | 0.72 | 0.715211 |
Target: 5'- gCUGCGCCUgcaGCgcGCGcacGCCGCCg -3' miRNA: 3'- -GACGCGGAaa-CGaaCGUua-UGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 72681 | 0.71 | 0.76625 |
Target: 5'- uCUGUGCCaucaccagguUUUGCUccGCGGUGCgCGCCg -3' miRNA: 3'- -GACGCGG----------AAACGAa-CGUUAUG-GCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 77075 | 0.71 | 0.76625 |
Target: 5'- uUGCGCCguccugUUUGCgcugGCGGUGCCGgCg -3' miRNA: 3'- gACGCGG------AAACGaa--CGUUAUGGCgGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 63273 | 0.71 | 0.76625 |
Target: 5'- -gGCGCCac-GCggUGCGcgACCGCCg -3' miRNA: 3'- gaCGCGGaaaCGa-ACGUuaUGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 62012 | 0.69 | 0.865237 |
Target: 5'- uUGCGCaaaaUUGCUUGUAAU-CCGCg- -3' miRNA: 3'- gACGCGga--AACGAACGUUAuGGCGga -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 86928 | 0.68 | 0.87301 |
Target: 5'- -aGCGCCgccuagagUGCgaggGCGA-GCCGCCa -3' miRNA: 3'- gaCGCGGaa------ACGaa--CGUUaUGGCGGa -5' |
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6744 | 3' | -52.8 | NC_001875.2 | + | 79107 | 0.68 | 0.887835 |
Target: 5'- -cGCGCaaaUGCUgGCGAU-CCGCCg -3' miRNA: 3'- gaCGCGgaaACGAaCGUUAuGGCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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