Results 61 - 80 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6745 | 3' | -52.7 | NC_001875.2 | + | 271 | 0.67 | 0.948109 |
Target: 5'- -----uUGUaUUGCUGGCGuCGCCGCa -3' miRNA: 3'- auuuuuGCAcAGCGACUGCcGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 46206 | 0.67 | 0.938776 |
Target: 5'- --cGAGCucGUUGagUGGCGGCGCUGCg -3' miRNA: 3'- auuUUUGcaCAGCg-ACUGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 9708 | 0.67 | 0.93373 |
Target: 5'- -----uCGUGcgCGCcGGCcGCGCCGCg -3' miRNA: 3'- auuuuuGCACa-GCGaCUGcCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 127370 | 0.67 | 0.938776 |
Target: 5'- cUGAAAGCaUG-CGCgGACGGCGCUn- -3' miRNA: 3'- -AUUUUUGcACaGCGaCUGCCGCGGcg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 54946 | 0.67 | 0.943568 |
Target: 5'- -cAAAACGUGgUGCuUGuuguaGGCGCCGUc -3' miRNA: 3'- auUUUUGCACaGCG-ACug---CCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 43735 | 0.67 | 0.952401 |
Target: 5'- uUGGAAACGggcGUUgGCUGGCuuGGCuGCUGCg -3' miRNA: 3'- -AUUUUUGCa--CAG-CGACUG--CCG-CGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 88965 | 0.67 | 0.952401 |
Target: 5'- uUGAAcGCGUugCGCUGGCGgaccuGCGCCuGCg -3' miRNA: 3'- -AUUUuUGCAcaGCGACUGC-----CGCGG-CG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 2728 | 0.67 | 0.948109 |
Target: 5'- --cAAGCGUucgucgucGUCGCUGucauugaaaGGCGCCaGCg -3' miRNA: 3'- auuUUUGCA--------CAGCGACug-------CCGCGG-CG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 115434 | 0.67 | 0.9431 |
Target: 5'- --cAAACGUGUCGCUGggacacaGCaGCuuGUCGCu -3' miRNA: 3'- auuUUUGCACAGCGAC-------UGcCG--CGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 94011 | 0.67 | 0.952401 |
Target: 5'- ---cAGCGUGUCGUacgUGAUcgccaccgccuuGGCGUCGUc -3' miRNA: 3'- auuuUUGCACAGCG---ACUG------------CCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 62623 | 0.67 | 0.932166 |
Target: 5'- ----cGCGcGUCGCccgaacaagcguacUGGCcgucGGCGCCGCg -3' miRNA: 3'- auuuuUGCaCAGCG--------------ACUG----CCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 17468 | 0.67 | 0.938776 |
Target: 5'- cGAGAugcACgGUGUUauggccagcaaGUUGGCGGaCGCCGCg -3' miRNA: 3'- aUUUU---UG-CACAG-----------CGACUGCC-GCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 5971 | 0.67 | 0.93373 |
Target: 5'- --uGAAUGUgGUCGCcGACGGCagGCCcaGCg -3' miRNA: 3'- auuUUUGCA-CAGCGaCUGCCG--CGG--CG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 125058 | 0.68 | 0.928429 |
Target: 5'- ----uGCGgGUCGCUGAUGcccugaaacaCGCCGCg -3' miRNA: 3'- auuuuUGCaCAGCGACUGCc---------GCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 110888 | 0.68 | 0.922873 |
Target: 5'- ----cGCGUuugCGCUgGACGGC-CCGCg -3' miRNA: 3'- auuuuUGCAca-GCGA-CUGCCGcGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 90880 | 0.68 | 0.922873 |
Target: 5'- --cGAACGU---GCUGGcCGGgGCCGCg -3' miRNA: 3'- auuUUUGCAcagCGACU-GCCgCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 49400 | 0.68 | 0.922873 |
Target: 5'- gGAGuGCGacaUGUCGCUagaGACGuuuGCGCUGCa -3' miRNA: 3'- aUUUuUGC---ACAGCGA---CUGC---CGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 32772 | 0.68 | 0.917061 |
Target: 5'- cGAGcGCGUccUCGCgcggcgugGGCgGGCGCCGCg -3' miRNA: 3'- aUUUuUGCAc-AGCGa-------CUG-CCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 106099 | 0.68 | 0.928429 |
Target: 5'- cGAAGACGUGUUGCgUGuGCuuCGCUGCa -3' miRNA: 3'- aUUUUUGCACAGCG-AC-UGccGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 69178 | 0.68 | 0.917061 |
Target: 5'- cUAAucACGUGcauuaaUCGCgUGcGCGGCGCCGa -3' miRNA: 3'- -AUUuuUGCAC------AGCG-AC-UGCCGCGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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