miRNA display CGI


Results 81 - 100 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 33030 0.68 0.917061
Target:  5'- --uAAGCGcagCGC-GGCgGGCGCCGCg -3'
miRNA:   3'- auuUUUGCacaGCGaCUG-CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 119695 0.68 0.922873
Target:  5'- cGAAAGCGcugGUUGCgcucgGGCucuuccGCGCCGCg -3'
miRNA:   3'- aUUUUUGCa--CAGCGa----CUGc-----CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 70016 0.68 0.919416
Target:  5'- gGAAAACGUG-CGCcguguuggcauugauUGuGCGGuCGCUGCg -3'
miRNA:   3'- aUUUUUGCACaGCG---------------AC-UGCC-GCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 73944 0.68 0.910995
Target:  5'- -----cCGUGUacaaGCUgGACGGCGUCGa -3'
miRNA:   3'- auuuuuGCACAg---CGA-CUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 16066 0.68 0.917061
Target:  5'- --------cGUCGCUGuggacgcacACGGCGCCGg -3'
miRNA:   3'- auuuuugcaCAGCGAC---------UGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 125058 0.68 0.928429
Target:  5'- ----uGCGgGUCGCUGAUGcccugaaacaCGCCGCg -3'
miRNA:   3'- auuuuUGCaCAGCGACUGCc---------GCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 110888 0.68 0.922873
Target:  5'- ----cGCGUuugCGCUgGACGGC-CCGCg -3'
miRNA:   3'- auuuuUGCAca-GCGA-CUGCCGcGGCG- -5'
6745 3' -52.7 NC_001875.2 + 90880 0.68 0.922873
Target:  5'- --cGAACGU---GCUGGcCGGgGCCGCg -3'
miRNA:   3'- auuUUUGCAcagCGACU-GCCgCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 49400 0.68 0.922873
Target:  5'- gGAGuGCGacaUGUCGCUagaGACGuuuGCGCUGCa -3'
miRNA:   3'- aUUUuUGC---ACAGCGA---CUGC---CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 73604 0.68 0.928429
Target:  5'- --cGAGCGccaacUGUUGC-GGCGGCgGCUGCg -3'
miRNA:   3'- auuUUUGC-----ACAGCGaCUGCCG-CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 12756 0.68 0.927885
Target:  5'- cGAAAugGguggcgGUUGUUGuccagccGgGGCGCCGCg -3'
miRNA:   3'- aUUUUugCa-----CAGCGAC-------UgCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 97931 0.68 0.926789
Target:  5'- ---cAACGUGUCGCUGcACcaaaccgaccccgaGGCGCUa- -3'
miRNA:   3'- auuuUUGCACAGCGAC-UG--------------CCGCGGcg -5'
6745 3' -52.7 NC_001875.2 + 48400 0.68 0.922873
Target:  5'- uUGAAuACGUGUUGCuucaauUGaACGGCaGCgCGCa -3'
miRNA:   3'- -AUUUuUGCACAGCG------AC-UGCCG-CG-GCG- -5'
6745 3' -52.7 NC_001875.2 + 50538 0.68 0.922873
Target:  5'- aGGAGGCGc--CGCcGGCGGCGCgCGUg -3'
miRNA:   3'- aUUUUUGCacaGCGaCUGCCGCG-GCG- -5'
6745 3' -52.7 NC_001875.2 + 115588 0.68 0.922873
Target:  5'- ----cACGUGacgcacgCGCgUGACGGCcucgucGCCGCa -3'
miRNA:   3'- auuuuUGCACa------GCG-ACUGCCG------CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 32772 0.68 0.917061
Target:  5'- cGAGcGCGUccUCGCgcggcgugGGCgGGCGCCGCg -3'
miRNA:   3'- aUUUuUGCAc-AGCGa-------CUG-CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 69178 0.68 0.917061
Target:  5'- cUAAucACGUGcauuaaUCGCgUGcGCGGCGCCGa -3'
miRNA:   3'- -AUUuuUGCAC------AGCG-AC-UGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 106099 0.68 0.928429
Target:  5'- cGAAGACGUGUUGCgUGuGCuuCGCUGCa -3'
miRNA:   3'- aUUUUUGCACAGCG-AC-UGccGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 18451 0.68 0.922873
Target:  5'- ----cGCGUGgcgCGCgaauCGcGCGCCGCu -3'
miRNA:   3'- auuuuUGCACa--GCGacu-GC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 80285 0.68 0.910995
Target:  5'- --uGAACGgcUCGCacuUGACGaGCGCCGUc -3'
miRNA:   3'- auuUUUGCacAGCG---ACUGC-CGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.