miRNA display CGI


Results 121 - 140 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 115754 0.69 0.891291
Target:  5'- cUAGcgGCGUG-CGCcaaacCGGCGCCGUg -3'
miRNA:   3'- -AUUuuUGCACaGCGacu--GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 96830 0.69 0.898107
Target:  5'- --uGGACGUuaugCGCgccuuguuUGACGGCGCgCGCa -3'
miRNA:   3'- auuUUUGCAca--GCG--------ACUGCCGCG-GCG- -5'
6745 3' -52.7 NC_001875.2 + 34161 0.69 0.884231
Target:  5'- -cGAAugGUGgcgcuuuguUCGUUGccguCGGCGUCGCg -3'
miRNA:   3'- auUUUugCAC---------AGCGACu---GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 21948 0.69 0.889898
Target:  5'- --uAAACGU-UCGCggcgcggggaugGGCGGCGCCaGCg -3'
miRNA:   3'- auuUUUGCAcAGCGa-----------CUGCCGCGG-CG- -5'
6745 3' -52.7 NC_001875.2 + 89895 0.69 0.898107
Target:  5'- --uGGACGUGUaCGU----GGCGCCGCg -3'
miRNA:   3'- auuUUUGCACA-GCGacugCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 5720 0.7 0.837064
Target:  5'- cUAAGAACcgaacaaaGUgGUCGUUGAUGGCGaCGCg -3'
miRNA:   3'- -AUUUUUG--------CA-CAGCGACUGCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 110646 0.7 0.837064
Target:  5'- ------gGUGgCGCUGGCcGUGCCGCg -3'
miRNA:   3'- auuuuugCACaGCGACUGcCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 44428 0.7 0.833647
Target:  5'- -uGGGGCG-GUCGUUGAacgcgaucagcaaGGCGCCGUc -3'
miRNA:   3'- auUUUUGCaCAGCGACUg------------CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 5122 0.7 0.828463
Target:  5'- cGGAAAgGUcacGUcCGCgGACGuGCGCCGCu -3'
miRNA:   3'- aUUUUUgCA---CA-GCGaCUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 91159 0.7 0.828463
Target:  5'- gAuuGACG-GUCGCgcaauugGACGGaauguCGCCGCg -3'
miRNA:   3'- aUuuUUGCaCAGCGa------CUGCC-----GCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 79119 0.7 0.819671
Target:  5'- ---cGGCGuUGUCgGC-GGCgGGCGCCGCg -3'
miRNA:   3'- auuuUUGC-ACAG-CGaCUG-CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 50211 0.7 0.837064
Target:  5'- cGAGAACGUGUCaacaaacaGCcguuUGgcGCGGCGCgGCa -3'
miRNA:   3'- aUUUUUGCACAG--------CG----AC--UGCCGCGgCG- -5'
6745 3' -52.7 NC_001875.2 + 48780 0.7 0.852852
Target:  5'- ----uGCGUGUuggUGCUGugguccuACGGCaGCCGCg -3'
miRNA:   3'- auuuuUGCACA---GCGAC-------UGCCG-CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 86089 0.7 0.845466
Target:  5'- ------gGUGUCGggcuCGGCGCCGCg -3'
miRNA:   3'- auuuuugCACAGCgacuGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 91228 0.7 0.837064
Target:  5'- gAGGcGCGUGguggCGCccaccACGGCGCCGUa -3'
miRNA:   3'- aUUUuUGCACa---GCGac---UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 18752 0.7 0.837064
Target:  5'- ---cGGCGgcuaaggCGCUGACGcGCGUCGCc -3'
miRNA:   3'- auuuUUGCaca----GCGACUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 88231 0.7 0.837064
Target:  5'- cAAAAACGg--CGCaagcGGCGcGCGCCGCc -3'
miRNA:   3'- aUUUUUGCacaGCGa---CUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 65714 0.7 0.845466
Target:  5'- ----cAC-UGUucCGCgGGCGGCGCCGCc -3'
miRNA:   3'- auuuuUGcACA--GCGaCUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 65768 0.7 0.853661
Target:  5'- -----uCGUG-CGCggcgGGCGGCGgCGCg -3'
miRNA:   3'- auuuuuGCACaGCGa---CUGCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 40266 0.7 0.853661
Target:  5'- cUGAAAACG-GUCGCguuuccguacgUGGCGGCgggcaacggGCUGCa -3'
miRNA:   3'- -AUUUUUGCaCAGCG-----------ACUGCCG---------CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.