miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 18752 0.7 0.837064
Target:  5'- ---cGGCGgcuaaggCGCUGACGcGCGUCGCc -3'
miRNA:   3'- auuuUUGCaca----GCGACUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 86089 0.7 0.845466
Target:  5'- ------gGUGUCGggcuCGGCGCCGCg -3'
miRNA:   3'- auuuuugCACAGCgacuGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 48780 0.7 0.852852
Target:  5'- ----uGCGUGUuggUGCUGugguccuACGGCaGCCGCg -3'
miRNA:   3'- auuuuUGCACA---GCGAC-------UGCCG-CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 88231 0.7 0.837064
Target:  5'- cAAAAACGg--CGCaagcGGCGcGCGCCGCc -3'
miRNA:   3'- aUUUUUGCacaGCGa---CUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 101903 0.69 0.884231
Target:  5'- uUAAAAACGUagGcCGCUuuagcGGCGGCGUCGa -3'
miRNA:   3'- -AUUUUUGCA--CaGCGA-----CUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 72445 0.69 0.884231
Target:  5'- cAAAAugGUGaUUGCgucGACGG-GCUGCa -3'
miRNA:   3'- aUUUUugCAC-AGCGa--CUGCCgCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 29795 0.69 0.867097
Target:  5'- -cGGGACuGUGcgggCGCUGGCGGCGCaugggucaacggcaCGCu -3'
miRNA:   3'- auUUUUG-CACa---GCGACUGCCGCG--------------GCG- -5'
6745 3' -52.7 NC_001875.2 + 68565 0.69 0.884231
Target:  5'- ---cGGCGgcgGUCGCgcaccgcgUGGCGCCGCu -3'
miRNA:   3'- auuuUUGCa--CAGCGacu-----GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 55334 0.69 0.876933
Target:  5'- gUGAuGACGcGcCGCUucGGgGGCGCCGCc -3'
miRNA:   3'- -AUUuUUGCaCaGCGA--CUgCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 95720 0.69 0.891291
Target:  5'- -uGAAACGcGaagUGCaUGAgCGGCGCCGCc -3'
miRNA:   3'- auUUUUGCaCa--GCG-ACU-GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 115754 0.69 0.891291
Target:  5'- cUAGcgGCGUG-CGCcaaacCGGCGCCGUg -3'
miRNA:   3'- -AUUuuUGCACaGCGacu--GCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 96830 0.69 0.898107
Target:  5'- --uGGACGUuaugCGCgccuuguuUGACGGCGCgCGCa -3'
miRNA:   3'- auuUUUGCAca--GCG--------ACUGCCGCG-GCG- -5'
6745 3' -52.7 NC_001875.2 + 50022 0.69 0.898107
Target:  5'- ----cGCGUGgUCGCcgGGCGGCGagGCg -3'
miRNA:   3'- auuuuUGCAC-AGCGa-CUGCCGCggCG- -5'
6745 3' -52.7 NC_001875.2 + 108878 0.69 0.869401
Target:  5'- gGAAAGCGcGgCGgaGGCguacauGGCGCCGCa -3'
miRNA:   3'- aUUUUUGCaCaGCgaCUG------CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 97767 0.69 0.891291
Target:  5'- --cGGGCGUGUgGCUGuuGGCGCa-- -3'
miRNA:   3'- auuUUUGCACAgCGACugCCGCGgcg -5'
6745 3' -52.7 NC_001875.2 + 77085 0.69 0.869401
Target:  5'- -----cUGUuugCGCUGGCGGUGCCGg -3'
miRNA:   3'- auuuuuGCAca-GCGACUGCCGCGGCg -5'
6745 3' -52.7 NC_001875.2 + 16890 0.69 0.869401
Target:  5'- ----uGCGUa-CGCgcaGCGGCGCCGCg -3'
miRNA:   3'- auuuuUGCAcaGCGac-UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 96350 0.69 0.876933
Target:  5'- aAAAuACGUcggcucGUUGCUGGCGcacauGCGCUGCa -3'
miRNA:   3'- aUUUuUGCA------CAGCGACUGC-----CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 767 0.69 0.876933
Target:  5'- ---cAugGggcaGCUGACGGCGgCGCg -3'
miRNA:   3'- auuuUugCacagCGACUGCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 6936 0.69 0.869401
Target:  5'- gUGAGcAACGcGUCGU--GCGuGCGCCGCg -3'
miRNA:   3'- -AUUU-UUGCaCAGCGacUGC-CGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.