Results 81 - 100 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6745 | 3' | -52.7 | NC_001875.2 | + | 6936 | 0.69 | 0.869401 |
Target: 5'- gUGAGcAACGcGUCGU--GCGuGCGCCGCg -3' miRNA: 3'- -AUUU-UUGCaCAGCGacUGC-CGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 21948 | 0.69 | 0.889898 |
Target: 5'- --uAAACGU-UCGCggcgcggggaugGGCGGCGCCaGCg -3' miRNA: 3'- auuUUUGCAcAGCGa-----------CUGCCGCGG-CG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 33061 | 0.69 | 0.894047 |
Target: 5'- gGAuAGCGUuccgCGCggcuccagacuuugaUGGCGGCGCCGUc -3' miRNA: 3'- aUUuUUGCAca--GCG---------------ACUGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 66118 | 0.69 | 0.898107 |
Target: 5'- --cGGGCGg--CGa-GGCGGCGCCGCc -3' miRNA: 3'- auuUUUGCacaGCgaCUGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 34161 | 0.69 | 0.884231 |
Target: 5'- -cGAAugGUGgcgcuuuguUCGUUGccguCGGCGUCGCg -3' miRNA: 3'- auUUUugCAC---------AGCGACu---GCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 21081 | 0.69 | 0.884231 |
Target: 5'- aAAAGACG---CGCggcGGCGGuCGCCGCg -3' miRNA: 3'- aUUUUUGCacaGCGa--CUGCC-GCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 767 | 0.69 | 0.876933 |
Target: 5'- ---cAugGggcaGCUGACGGCGgCGCg -3' miRNA: 3'- auuuUugCacagCGACUGCCGCgGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 77085 | 0.69 | 0.869401 |
Target: 5'- -----cUGUuugCGCUGGCGGUGCCGg -3' miRNA: 3'- auuuuuGCAca-GCGACUGCCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 16890 | 0.69 | 0.869401 |
Target: 5'- ----uGCGUa-CGCgcaGCGGCGCCGCg -3' miRNA: 3'- auuuuUGCAcaGCGac-UGCCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 80285 | 0.68 | 0.910995 |
Target: 5'- --uGAACGgcUCGCacuUGACGaGCGCCGUc -3' miRNA: 3'- auuUUUGCacAGCG---ACUGC-CGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 110888 | 0.68 | 0.922873 |
Target: 5'- ----cGCGUuugCGCUgGACGGC-CCGCg -3' miRNA: 3'- auuuuUGCAca-GCGA-CUGCCGcGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 19703 | 0.68 | 0.904676 |
Target: 5'- cGAAgcGAgGUGUacgCGCUGugGGCcgagGCCGUa -3' miRNA: 3'- aUUU--UUgCACA---GCGACugCCG----CGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 15992 | 0.68 | 0.910995 |
Target: 5'- ---cAACGUGUUGuUUGAcCGGCugcuggGCCGCg -3' miRNA: 3'- auuuUUGCACAGC-GACU-GCCG------CGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 19104 | 0.68 | 0.910995 |
Target: 5'- cAGGGcCGUGUUGCUGuGCGcGCGaCGCg -3' miRNA: 3'- aUUUUuGCACAGCGAC-UGC-CGCgGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 73944 | 0.68 | 0.910995 |
Target: 5'- -----cCGUGUacaaGCUgGACGGCGUCGa -3' miRNA: 3'- auuuuuGCACAg---CGA-CUGCCGCGGCg -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 125058 | 0.68 | 0.928429 |
Target: 5'- ----uGCGgGUCGCUGAUGcccugaaacaCGCCGCg -3' miRNA: 3'- auuuuUGCaCAGCGACUGCc---------GCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 32772 | 0.68 | 0.917061 |
Target: 5'- cGAGcGCGUccUCGCgcggcgugGGCgGGCGCCGCg -3' miRNA: 3'- aUUUuUGCAc-AGCGa-------CUG-CCGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 49400 | 0.68 | 0.922873 |
Target: 5'- gGAGuGCGacaUGUCGCUagaGACGuuuGCGCUGCa -3' miRNA: 3'- aUUUuUGC---ACAGCGA---CUGC---CGCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 90880 | 0.68 | 0.922873 |
Target: 5'- --cGAACGU---GCUGGcCGGgGCCGCg -3' miRNA: 3'- auuUUUGCAcagCGACU-GCCgCGGCG- -5' |
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6745 | 3' | -52.7 | NC_001875.2 | + | 69178 | 0.68 | 0.917061 |
Target: 5'- cUAAucACGUGcauuaaUCGCgUGcGCGGCGCCGa -3' miRNA: 3'- -AUUuuUGCAC------AGCG-AC-UGCCGCGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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